Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01547 ATGGCACCAAGATACAGTCGCTCAAAGGGCAAAGGAGAGAAGAAGAAGAGAGAAGAAAAGGTTCTTCCTGTTCTAATGGATATCACTGTTAATCTGCCCGATGAAACACATGTTGTTCTCAAGGGACTGATTGTTTTTGTGAAACAGGGGATTTCAATGGACAAAATAATTGATGTTCGTAGACTTTTATCAGTGAATACAGAGACTTGTTATATCACCAATTTTTCCCTATCTCATGAGGTGAGAGGACCGCAATTAAAGGACACGGTGGACGTGTTCGCACTCAAGCCATGCGTCCTCACTTTAATTGAAGAGGATTATGACGAAGATAGAGCAGTGGCTCACGTCAGACGGCTACTGGACATCGTGGCCTGCACGACGTACTTCGGCCACTCGTCGGCGGCGAAGAATGCGAACTCTCACGCGCCGCTGCCCGCGGCGGTTTCGGTTGACGGAGATTGCGAGATAAGCCACTCGTGCCCTAGGCTCGGTAGCTTCTACGAGTTTTTCTCTCTTTCGCATCTCACTCCTCCTTTCCAATATATAAAGAAAACAGTGAGACGACGAGTTCCGGAGATATTGGAGGCGGATCATCTCTTCTCCTTTGATGTGAAGCTATGTAACGGGAAAGTAGTGCATGTTGAAGCTTGCAGAAATGGATTTTGCAGTGTTGGAAAGCAGCTGATATTTAGTCATAACCTTGTTGATTTGTTAACACGGCTTAGTAGAGCTTTTGCTACTGCTTATGATGATCTATTAAAAGCATTTTCAGAACGTAATAAGTTTGGGAATCTCCCTTACGGCTTCAGAGCCAACACATGGCTTGTTCCTCCTGCAGTGGTGCAATCACCGTCAGTTTTCCCTCCCCTTCCCGTGGAGGATAAAAACTGGAGAGGAAATGGTGGCGGTCTAGGAAGGGATGGGAAATTTGATTTGATTCCTTGGGCCAAGGAGTTTTCATTTATTGCATTTATGCCTTGCAAGACAGCAGAAGAAAGGCAAATTCGTGATAGAAAAGCATTCCTTCTCCACACCTTATTTATTGATGTTGCCATTTTGAGAGCTATTAAGGCTGTTAAACATGTAATGGGAGAGTCCGATGTACACAGTTCTATTACAGAAAATGGTATTCATTTCACCGAGAGAGTAGGTGACTTGAGTATCAAAGTCACGAAGGATGCGTCTGTCGCTAACTGCAAGGTTGATTCGAAAATTGATGGAGTTGAAGCTACTGGAATAAATCAAAAGGATCTAATAGAGAGAAATCTACTGAAAGGAATTACTGCTGATGAGAATACTGCAGCCCATGACATTACCACTTTAGGTGTTGTTGTTGTAAGATACTGTGGTTATTTGGTTTCCGTGAAAGTTGAGGGGGGAGAAAATGAAAATGTCAACTCTTCATCTTATCAAAGTATTGAATTGTTTGGTCAGCCAGATGGTGGTGCCAATGCACTCAACATTAACAGTTTAAGACTACTTCTCAACTCAGCACAGTCAGAGAAGAATAGACGCAATCAGATGCAAATGCATGAGACTGAAGAGCTTGGAGTTTCTCAAGCTTTTGTGGAGAGGCTTATTAAAGAAAGCCTTTCTAAGCTTGAGGAAGAGGAATATGGTGTGGACAATTTCATAAGATGGGAACTTGGAGCATGCTGGATACAACATTTGCAAGACCACAATAGCGAAAAAGATAAAAAACCATTGTTGGATAAGGCTGAGAATGAAACGAAAGCTGAGGGGCTAGGGAAACCCTTCAAAGCCCTCAAGAATAATAAAAATAAATCTGATCGAAGTAGTGTGAAACTGGCATCTGAAAACTCCAAATCTCATGTGGCATGTGTTAATGGAGAGCCTGAAAGTGCTTTGGTGCCCTCAGTTGAATCCACACATGAAACAGCAGAAGCAAAAAATGAACTTTTGCTAAAGGGATTGCTATCTGAAGCAGCTTTTACTCGGTTAAAAGAATCAGGAACTGGACTTCACAGCAAGTCCATGGAAGACCTCATTGACTTGTCAAAAAAATATTACGTGGATGTTGCTCTCCCAAAGCTGGTTGCAGATTTTGGCTCGTTGGAACTCTCTCCTGTTGATGGTCGCACCTTAACTGATTTTATGCATACTAGGGGTCTACGTATGCATTCTCTTGGACATGTTGTTAGTGCTCTAAACTTGTTTTCTTACTTTGTGCCGGAGCAGTCTTCTCACTCACCCCTATTTGCTCATTCTTTTGACATCCAGATTTCTTCTCCCAATTATGTCAAGCTTTCCGAAAAACTATCACATGTACAGTCACTTTGTATTCATGAGATGATTGTTCGAGCTTTCAAGCATATCCTGCGGGCAGTGATTGCAGTTGTTGACAAGGAAATAATGGCGACATCCATTGCTGCTACATTGAATTTACTGCTTGGTGTTCCTGAAGATAGAGAGTCAGATAAATCATGCAAAATCCACCCTCTTGTATGGAAATGGCTAGAGGTGTTTCTGAAGAAGCGATTTGATTGGGATCTTAGCAGCTTGAATTACAGTAATGTGAGGAAGTTTGCGATTTTGCGTGGCTTATGTCATAAGGTTGGCATTGAGCTTGTTCCAAGGGATCTTGATATGAATTCTTCAATTCCCTTCCAGAAATCTGACATTGTCAGCTTGGTTCCAGTTCACAAGCAAGCAGCATGTTCATCTGCAGATGGCAGGCAGCTATTAGAGTCATCAAAAACAGCTTTAGACAAGGGAAAGCTCGAAGATGCTGTTGCCTATGGAACAAAGGCTCTTGCTAGACTTGTAGCTGTTTGTGGCCCCTATCATCGGATGACAGCAGGAGCATACAGCTTACTTGCTGTAGTCTTATATCACACTGGAGACTTCAATCAGGCTACAATTTATCAACAAAAAGCTCTGGATATTAACGAGAGAGAGCTAGGTCTGGATCATCCAGATACTATGAAGAGTTATGGAGATCTTGCAGTTTTCTACTACAGACTTCAACATACAGAGCTAGCTCTGAAGTATGTAAAGCGGGCATTATATCTTCTGCATCTAACGTGTGGTCCATCTCATCCAAACACTGCTGCAACATACATTAATGTGGCTATGATGGAGGAAGGGCTTGGTAATGTAAATGTGGCTCTTAGGTATCTTCACAAAGCTCTAAAGTGCAACCAAAGATTACTTGGTCCAGATCATATTCAGACTGCTGCGAGTTATCATGCAATAGCAATAGCACTCTCATTGATGGAAGCATATCCTCTGAGTGTACAGCATGAGCAAACAACATTGCAAATTCTGCGGGCAAAACTTGGTCCAGATGACTTGCGGACCCAGGATGCTGCTGCTTGGCTTGAGTATTTTGAGTCCAAGGCTTTAGAACAACAAGAAGCTGCACGGAATGGTACTCAAAAGCCAGATACATCTATTGCTAGCAAGGGCCATCTAAGTGTGTCAGACTTGCTTGACTACATTAATCCAAGTCATGATCCTAAAGGGAGAAATATTGCACTAAGGAAAAGAAGCCAGATAGCAAAGATGAGGATGGAATCCTGCCAGAACATTGGCTCAGCAAGTTCTGATGAGTCTTGGAAAGAAACTCCAAGAGAGACTTCAGATGAAGTGATACACATACCTGGAGCAGGTGTTGATGTAGATACTGATCTGGAGACCAACTCAGCACCTGATTCAGAACAGCCCATTTTAGAAAAGACCTCGGATGAAAAACAAGTTTCTGTTGAAATCTTGTCTGAAGCACATGCTGATGGTGAGGATGGATGGCAACCAGTTCAACGGCCAAGATCATCTGGTTCATATGGCCAGCGGCTGAAGCAAAGACGAGCAACAATTGGTAAAGTTTATCATCAGAAAAAGAAAATGGAATCCGGCATAGACTATACCTATGGGAAGAGTTGTGAACAGAACAGTAGATGTTATATTCTGAAGAAGAGAACAATATCCCATGGGGTTTATGCTGATGATCATACTGTAAACATATCCCAAGGAACTAAATTTGGAAGGAAAATGGTCAAAGCTGCTACATACAGGGTGAAGTCCGTGTCTGCATCTGATAACACTACTGTAAAGGATTCATCAGAAATTGGTGATAAACTAATCAGTTCTTACTCACAAGTTGGTTCACTTTCAGCATCAAATGATAATAGTACTCTTAAGACTTCTATAATTAGTATTGGGAAATCTCCTTCGTACAAAGAAGTGGCGGTGGCTCCTCCTGGGACAATTTCCAAGTTGCAAGTCTATAATCCTCAAAGTAATTTTCCTGTTTTTGGCGTGGGAAAACATGAAGAGGAAGATCTTAAAATTCATGCAAATTCTGAACCAACCCTGGAAGAGGTAAAAAATACATTAAAAGAGAAGGACAAAATTTCTGTGTCAGATTCTTTGGATTTAAATCATACTAATGATCCTGAGAGGAAACAAACACAGTTTACTGATTCTGTTCAAGAAAAATTGGAGAGTGCTGAAGGGGTTGATTCTGTGGATGTTGAGGTTCATGAAGCAGTTGATAATATCATAATGATTGATGCAGTGGAGGATCCTGTGGATTCTCATAAACTTGACGTTGACACTAGCAACTCTGACTGTTTTGAACTCCCTAATCATACTACTACCATCTCACAAGACGGTGAAGATTTAAGAGTCAGTGTTTCTCCATCAAGTCAGGGTGATTCCCAGGGCATCCCATATAAGAAGTTATCTGCATCTGCAGCTCCATTCAATCCGGCACCAGGCATTGCACGAGCTGCACCAGTTCCTTCTGTTCCCGGTGCTGTTCCGCCAATTGGGCCCTGGCCAGTAAATATGAATGTTCACCATGGACCTGCTACCATGTTACCAGCAGTTACCCAAATGTGTTCCTCTCCTCACCATGCATACCCATCACCTCCACCTACACCAAACATGATACAACCATTGCCATTCATGTATCCTCCTTATACTCAGCCTCAATCAATACCATCCAACAATTTTCCAGTTACTAGCAGCGCATTTCATGTCAATCAGTTCGCATGGCAATGTAATATGAACTCAACTGTATCTAATTTTGGTCCCAATGGAGTATGGCCTGGTTGTCATCCGGTGGAATTTCCTCCTCTGGCACCTAGCATCAAACCAATCCCTGATCCCATTTTGGAGCCACAAAAACAGTGTCATGTTTCAAAAAGTTCAAGCTCCGCTTTTGTTCTGCCGGAGGGCTTTACTAATGATGGTGGATATAAGAAAGAGGGGCAACCTTTAGAATCAGAGACTAGCGAGGGTGAAGTGGGTAGAGTTCACGCAGAAAGTGTGAAAGAAAATGGGAATCCTAATTTTCATGGGTTTGAAAATGCTGGGGACAAACCCAATAATGACATTGGCTTGAATAAGATCAGCAGAAATGAAAAGAACCTAGATGGTGAGAAAACGTTCAGTATTTTGATTAGGGGAAGAAGAAACCGGAAGCAGACACTAAGAATGCCAATAAGTTTGCTAACTAGACCCAGTAGCTCACAGTCATTCAAGGTTACTTATAACCGCGTTGTCAGAGGAAGTGATGTACCCAAGTCCATCAACTTGTCTTCTAGAAGAGACTGTACAGCTACTGCTTAA 5595 0.4222 MAPRYSRSKGKGEKKKREEKVLPVLMDITVNLPDETHVVLKGLIVFVKQGISMDKIIDVRRLLSVNTETCYITNFSLSHEVRGPQLKDTVDVFALKPCVLTLIEEDYDEDRAVAHVRRLLDIVACTTYFGHSSAAKNANSHAPLPAAVSVDGDCEISHSCPRLGSFYEFFSLSHLTPPFQYIKKTVRRRVPEILEADHLFSFDVKLCNGKVVHVEACRNGFCSVGKQLIFSHNLVDLLTRLSRAFATAYDDLLKAFSERNKFGNLPYGFRANTWLVPPAVVQSPSVFPPLPVEDKNWRGNGGGLGRDGKFDLIPWAKEFSFIAFMPCKTAEERQIRDRKAFLLHTLFIDVAILRAIKAVKHVMGESDVHSSITENGIHFTERVGDLSIKVTKDASVANCKVDSKIDGVEATGINQKDLIERNLLKGITADENTAAHDITTLGVVVVRYCGYLVSVKVEGGENENVNSSSYQSIELFGQPDGGANALNINSLRLLLNSAQSEKNRRNQMQMHETEELGVSQAFVERLIKESLSKLEEEEYGVDNFIRWELGACWIQHLQDHNSEKDKKPLLDKAENETKAEGLGKPFKALKNNKNKSDRSSVKLASENSKSHVACVNGEPESALVPSVESTHETAEAKNELLLKGLLSEAAFTRLKESGTGLHSKSMEDLIDLSKKYYVDVALPKLVADFGSLELSPVDGRTLTDFMHTRGLRMHSLGHVVSALNLFSYFVPEQSSHSPLFAHSFDIQISSPNYVKLSEKLSHVQSLCIHEMIVRAFKHILRAVIAVVDKEIMATSIAATLNLLLGVPEDRESDKSCKIHPLVWKWLEVFLKKRFDWDLSSLNYSNVRKFAILRGLCHKVGIELVPRDLDMNSSIPFQKSDIVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVAYGTKALARLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVNVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKALEQQEAARNGTQKPDTSIASKGHLSVSDLLDYINPSHDPKGRNIALRKRSQIAKMRMESCQNIGSASSDESWKETPRETSDEVIHIPGAGVDVDTDLETNSAPDSEQPILEKTSDEKQVSVEILSEAHADGEDGWQPVQRPRSSGSYGQRLKQRRATIGKVYHQKKKMESGIDYTYGKSCEQNSRCYILKKRTISHGVYADDHTVNISQGTKFGRKMVKAATYRVKSVSASDNTTVKDSSEIGDKLISSYSQVGSLSASNDNSTLKTSIISIGKSPSYKEVAVAPPGTISKLQVYNPQSNFPVFGVGKHEEEDLKIHANSEPTLEEVKNTLKEKDKISVSDSLDLNHTNDPERKQTQFTDSVQEKLESAEGVDSVDVEVHEAVDNIIMIDAVEDPVDSHKLDVDTSNSDCFELPNHTTTISQDGEDLRVSVSPSSQGDSQGIPYKKLSASAAPFNPAPGIARAAPVPSVPGAVPPIGPWPVNMNVHHGPATMLPAVTQMCSSPHHAYPSPPPTPNMIQPLPFMYPPYTQPQSIPSNNFPVTSSAFHVNQFAWQCNMNSTVSNFGPNGVWPGCHPVEFPPLAPSIKPIPDPILEPQKQCHVSKSSSSAFVLPEGFTNDGGYKKEGQPLESETSEGEVGRVHAESVKENGNPNFHGFENAGDKPNNDIGLNKISRNEKNLDGEKTFSILIRGRRNRKQTLRMPISLLTRPSSSQSFKVTYNRVVRGSDVPKSINLSSRRDCTATA 1864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01547 1864 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 12 1488 IPR027523 GO:0006996
Vimu2g01547 1864 SUPERFAMILY TPR-like 905 1093 IPR011990 GO:0005515
Vimu2g01547 1864 MobiDBLite consensus disorder prediction 1732 1757 - -
Vimu2g01547 1864 MobiDBLite consensus disorder prediction 576 617 - -
Vimu2g01547 1864 SMART tpr_5 1024 1057 IPR019734 GO:0005515
Vimu2g01547 1864 SMART tpr_5 982 1015 IPR019734 GO:0005515
Vimu2g01547 1864 SMART tpr_5 940 973 IPR019734 GO:0005515
Vimu2g01547 1864 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 895 1145 - -
Vimu2g01547 1864 MobiDBLite consensus disorder prediction 1213 1274 - -
Vimu2g01547 1864 MobiDBLite consensus disorder prediction 1538 1564 - -
Vimu2g01547 1864 MobiDBLite consensus disorder prediction 1459 1481 - -
Vimu2g01547 1864 Pfam Translation initiation factor eIF3 subunit 135 694 868 IPR033646 -
Vimu2g01547 1864 CDD CLU-central 696 870 IPR033646 -
Vimu2g01547 1864 Gene3D Tetratricopeptide repeat domain 1014 1146 IPR011990 GO:0005515
Vimu2g01547 1864 Gene3D Tetratricopeptide repeat domain 899 1013 IPR011990 GO:0005515
Vimu2g01547 1864 Pfam Mitochondrial function, CLU-N-term 54 123 IPR028275 -
Vimu2g01547 1864 MobiDBLite consensus disorder prediction 590 604 - -
Vimu2g01547 1864 MobiDBLite consensus disorder prediction 1230 1256 - -
Vimu2g01547 1864 MobiDBLite consensus disorder prediction 1766 1785 - -
Vimu2g01547 1864 Pfam Tetratricopeptide repeat 939 1009 - -
Vimu2g01547 1864 Pfam Tetratricopeptide repeat 1023 1097 - -
Vimu2g01547 1864 ProSiteProfiles TPR repeat profile. 940 973 IPR019734 GO:0005515
Vimu2g01547 1864 ProSiteProfiles Clueless (Clu) domain profile. 293 568 IPR025697 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01547 Vimu-Chr2 10767366 10783062 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01547 K03255 - gmx:100784117 2499.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01547 2 10767366 10783062 Vimu9g00098 9 1156701 1173895 PCT