Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00093 ATGTCTTCTGCTGGTGTCACCATCCTTAGCCCTGTTCCAAGGGAACTGTTACTGTCTTCAAATGGATACCATACTCCACTTCACTTGTCATTGGATCATGAGTTTATTTTCATATTTCTCTCCCATTCGGGATCCTTGACTCCGATGCGTGTCCTTCCATACGATACCATTGAGTCGTTGAAACTCAAAATCAAAAAGGTTGAGGGGCTTCCTTCATTGACAAACAAACAAAAGTTGGTTTGTGATGGACGAGAGCTAGCGCGGAGCAATTCCCTGCTGAAGGACTATGGGGTTACGGAAGGAAATGTTTTGCATTTGGTGATTAGGCTGTCGGATCTCCAGACCATCAGTGTGAGAACCTCTTCTGGAAAAGACTTTACCTTTCAGGTGGAGAAATGCAGGGATGTTGGGTATGTGAAGCAGCAGATTGCAAAAAAGGAGAAGCGCTTTGCTGATCCTGAACAGCAGGAGGTTGTGTGTAACGGGGAGCTGCTTGAGGATCAGAGGGTTATTGATGATATATGTAGTAAATATAATGATGTAGTGATTCATCTTTTTGTTAGAGTCAAATATGCTGAAGTTAGGACAGGACAAGATGAGTTGTCGGTCAAGGCAAAGGAGTTGAATGGTACAAAAGATTACGATGCTAGTGAAAATAATTGTAGGAGAGAACGTGATGTTAGTAAAGAAGACGAGGGAAGGGAGGATGGAACCAACGAGCCAATTGTGGCAAGGAAGGCTCTTGATAGAGATCTTTTGGAGCCTGTCATTGTTAATAAGAAAATTGAATTGGCTTCAGAGGTTTGGAATATGATAAACATGACATACGAAGGACTAAACAGTGGAAATTATCCAATCAGATCAGCAGAGGGTACAGGGGGAGCTTACTTTATGCTTGATTCAACTGGGCAAAAGTATGTATCCGTTTTTAAGCCCATTGATGAAGAGCCAATGGCTGTGAATAACCCTAGAGGTTTACCTTTCTCAGTAGATGGTGAAGGCTTAAAGAAGGGTACTAGAGTTGGTCAGGGGGCGTTCAGGGAAGTTGCAGCTTATATTTTGGACCATCCAATGAGGGGTCATCGATCAATATTTGGTGATCAGAAGGGCTTTGCTGGGGTTCCTCCAACTGTTATGGTTAAGTGCTTGCATGAAGGATTTAACCATCCTGGGGAATTGACTACTAAGCTTGGCTCCTTGCAAATGTTCATGGAGAACAATGGAAGCTGCGAGGATATGGGTCCTGGGGCTTTTCCAGTGAAGGAAGTGCATAAAATTACTGTTCTGGACATGAGGCTCGCAAATGCAGATAGACATGCCGGGAATATTTTGATCGGCAAAGAGGAGGAAAATGGCCAGGCTGTGTTGATTCCAATTGATCATGGATACTGCTTGCCCACTAGTTTTGAAGATTGTACCTTTGAATGGCTTTATTGGCCCCAAGCACGCCAACCATACTCTCCTGAGATCATTGACTATATAAGGTCACTGAATGCCGATGAAGATATTGCCCTTTTGAAGTTTCATGGATGGAATCTGCCAGTTGAATGTGCACGCACCCTTCAAATCTCAACCATGCTTCTGAAGAAAGGAGTGGAGAGAGGAATGACCCCTTTTGACATTGGAAGCCTTATGTGCAGGGAATCCTTGAACAAGGAGTCTGTGATTGAGGGAATTGTAAAGGCAGCTCTGGATTCTGTTCTTCCTGGCACAAGTGAAGAAACATTTCTTGATGCTGTTTCTGAAATCATGGACCAGCACCTTGATCAGATTCTGTCATAG 1782 0.436 MSSAGVTILSPVPRELLLSSNGYHTPLHLSLDHEFIFIFLSHSGSLTPMRVLPYDTIESLKLKIKKVEGLPSLTNKQKLVCDGRELARSNSLLKDYGVTEGNVLHLVIRLSDLQTISVRTSSGKDFTFQVEKCRDVGYVKQQIAKKEKRFADPEQQEVVCNGELLEDQRVIDDICSKYNDVVIHLFVRVKYAEVRTGQDELSVKAKELNGTKDYDASENNCRRERDVSKEDEGREDGTNEPIVARKALDRDLLEPVIVNKKIELASEVWNMINMTYEGLNSGNYPIRSAEGTGGAYFMLDSTGQKYVSVFKPIDEEPMAVNNPRGLPFSVDGEGLKKGTRVGQGAFREVAAYILDHPMRGHRSIFGDQKGFAGVPPTVMVKCLHEGFNHPGELTTKLGSLQMFMENNGSCEDMGPGAFPVKEVHKITVLDMRLANADRHAGNILIGKEEENGQAVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPEIIDYIRSLNADEDIALLKFHGWNLPVECARTLQISTMLLKKGVERGMTPFDIGSLMCRESLNKESVIEGIVKAALDSVLPGTSEETFLDAVSEIMDQHLDQILS 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00093 593 Pfam Phosphatidylinositol 3- and 4-kinase 291 540 IPR000403 -
Vimu9g00093 593 SUPERFAMILY Ubiquitin-like 19 110 IPR029071 -
Vimu9g00093 593 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 45 566 IPR044571 -
Vimu9g00093 593 SMART ubq_7 36 109 IPR000626 GO:0005515
Vimu9g00093 593 SMART ubq_7 114 188 IPR000626 GO:0005515
Vimu9g00093 593 Gene3D - 114 193 - -
Vimu9g00093 593 ProSiteProfiles Ubiquitin domain profile. 114 173 IPR000626 GO:0005515
Vimu9g00093 593 MobiDBLite consensus disorder prediction 213 242 - -
Vimu9g00093 593 Gene3D - 35 113 - -
Vimu9g00093 593 Pfam Ubiquitin family 116 189 IPR000626 GO:0005515
Vimu9g00093 593 Pfam Ubiquitin family 39 110 IPR000626 GO:0005515
Vimu9g00093 593 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 282 575 IPR000403 -
Vimu9g00093 593 ProSiteProfiles Ubiquitin domain profile. 36 109 IPR000626 GO:0005515
Vimu9g00093 593 CDD Ubl_ubiquitin_like 116 186 - -
Vimu9g00093 593 SUPERFAMILY Ubiquitin-like 109 188 IPR029071 -
Vimu9g00093 593 SUPERFAMILY Protein kinase-like (PK-like) 428 591 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00093 Vimu-Chr9 1109074 1111618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00093 1 590 Acyl Lipid Metabolism Gene Families AT5G24240 54.515 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00093 - - gmx:100815111 1078.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00093 9 1109074 1111618 Vimu10g02149 10 31527274 31529944 ECH
Vimu9g00093 9 1109074 1111618 Vimu9g00093 9 1109074 1111618 ECH
Vimu2g01544 2 10747264 10749160 Vimu9g00093 9 1109074 1111618 PCT