Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01544 ATGTCTTCAGCCGGTGTCAGTACTCTTAGCGTGGTTCCCTCTGAGCCATTGTTGTCACCAAAGGCATTCCCTTTCCCATCACACTTGTCTTTGGAAGATAAATCCATTTTCATATACCTCTCCTTTTCGGGTTCGTTGACTCCAATCCGTGTTATGGAGTGGGATACCATTAGGTCTGTGAAATTCAAAATCCAAAGGTGTGAAAGCCTTCCATTTTTAACAAACAAGCAGAAGTTGGTTTATGCTGGCCGAGAACTCGCGCGGAGTGATTCTCTGCTCAAGGACTATGGAGTGACTGATGGGAATGTCTTGCATTTGATAATCAAACTGTCAGATCTTCAGGTCATCAATGTGAAAACTTCTTCCGGGAAGGAGTTCTCGTTTCAGGTTGAAAGAGGTCGAGATGTTAGATTCATAAAGCGGCGAATTGCAAAAAGAGAGAAACAGTTTGATGATCCTGAGGAACAGGAGCTTGTGTGCAATGGGGAAAGGCTTGATGACCAGAGGCTTATTGATGACATCTGCTGCAAGCATAATGATGCTGTGCTACATCTTTTCGTGAGAAAAAAGAATGTTAAAATTCAGAGGAGACCCCTTGAGTTGTCCATCTTAGCAACAGATTTGACTGATGAGAAAAAGAACGATGTCAATGGAAAAACATGCAGGAGGAATTATGATGTTGGTATAGAAGATACTTGTAGAAAACCTCCCGACAGAGATTTCTTTTTGGAGCCAGTTATTATTAACCCTAAAATTGAATTAGCTTCATCTATTAGGAATATGGTGAATTCTACATATGATGGACTTGACAGTGGAAAATATCCAATCAGATCTGCAGAGGGTACAGGAGGAGCTTACTTTATGCTTGATTCAGTGGGGCAAAAGTATGTGTCTGTTTTTAAGCCTATTGACGAAGAACCAATGGCGGTGAATAACCCTCGAGGTCTTCCATTGTCATTAGATGGTGAAGGCTTAAAAAAGGGTACAAGGGTTGGTCAAGGTGCATTCAGGGAAGTTGCAGCCTATGTTCTAGATCATCCATTGAGTGGGCGCCGCAAATTATTTGGTGATGAGACGGGCTTTGCAGGTGTCCCTCCAACATTGATGATCAAGTGCTTACATAAAGCATTTAACTATCCTAGAGAGTTGACTCCTAAGATAGGTTCCTTGCAAATGTTCACAGAAAATAATGGAAGTTGTGAAGATATGGGCCCTGGGGCTTTCCCAGTAAAGGAAGTACATAAAATTTCTGTTCTGGACATAAGACTGGCAAATGCAGATCGGCATGCTGGGAATATTTTGATCAGCAAAGAGAAAAGCAACAACCAGTCTGTTCTGATTCCAATTGATCATGGATACTGCTTGCCTACAAGCTTTGAAGATTGTACCTTTGAGTGGCTTTACTGGCCCCAAGCTTGCCAGCCATACTCCCCAGAAACTATTGACTACATAAAGTCACTGGATGCTGAAGAAGATATTTCCCTTTTAAAATTTCACGGATGGGATCTGCCGGTTGAATGTGCTCGCACTCTTAGGATCTCAACCATGCTTTTGAAGAAAGGGACACAAAGAGGGTTGACCCCCTTTACCATTGGAAGCATGATGTGCAGGGAATCCTTGAACAAGGAATCTGTGATTGAAGAAATAGTTCAAGAAGCACTGGATTCTGTTCTTCCTGGCACAAGTGAAGCTACATTGCTGGATGCTGTTTCCCAAATCATGGATCTGCGCCTCGATGAGATTGTCAGATCTCGTTTATAA 1761 0.4236 MSSAGVSTLSVVPSEPLLSPKAFPFPSHLSLEDKSIFIYLSFSGSLTPIRVMEWDTIRSVKFKIQRCESLPFLTNKQKLVYAGRELARSDSLLKDYGVTDGNVLHLIIKLSDLQVINVKTSSGKEFSFQVERGRDVRFIKRRIAKREKQFDDPEEQELVCNGERLDDQRLIDDICCKHNDAVLHLFVRKKNVKIQRRPLELSILATDLTDEKKNDVNGKTCRRNYDVGIEDTCRKPPDRDFFLEPVIINPKIELASSIRNMVNSTYDGLDSGKYPIRSAEGTGGAYFMLDSVGQKYVSVFKPIDEEPMAVNNPRGLPLSLDGEGLKKGTRVGQGAFREVAAYVLDHPLSGRRKLFGDETGFAGVPPTLMIKCLHKAFNYPRELTPKIGSLQMFTENNGSCEDMGPGAFPVKEVHKISVLDIRLANADRHAGNILISKEKSNNQSVLIPIDHGYCLPTSFEDCTFEWLYWPQACQPYSPETIDYIKSLDAEEDISLLKFHGWDLPVECARTLRISTMLLKKGTQRGLTPFTIGSMMCRESLNKESVIEEIVQEALDSVLPGTSEATLLDAVSQIMDLRLDEIVRSRL 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01544 586 SUPERFAMILY Ubiquitin-like 109 190 IPR029071 -
Vimu2g01544 586 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 272 565 IPR000403 -
Vimu2g01544 586 Gene3D - 30 114 - -
Vimu2g01544 586 SUPERFAMILY Protein kinase-like (PK-like) 416 581 IPR011009 -
Vimu2g01544 586 Gene3D - 115 201 - -
Vimu2g01544 586 ProSiteProfiles Ubiquitin domain profile. 34 109 IPR000626 GO:0005515
Vimu2g01544 586 Pfam Phosphatidylinositol 3- and 4-kinase 281 531 IPR000403 -
Vimu2g01544 586 SUPERFAMILY Ubiquitin-like 33 110 IPR029071 -
Vimu2g01544 586 Pfam Ubiquitin family 116 189 IPR000626 GO:0005515
Vimu2g01544 586 Pfam Ubiquitin family 38 110 IPR000626 GO:0005515
Vimu2g01544 586 ProSiteProfiles Ubiquitin domain profile. 116 173 IPR000626 GO:0005515
Vimu2g01544 586 CDD Ubl_ubiquitin_like 116 186 - -
Vimu2g01544 586 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 46 556 IPR044571 -
Vimu2g01544 586 SMART ubq_7 36 109 IPR000626 GO:0005515
Vimu2g01544 586 SMART ubq_7 114 188 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01544 Vimu-Chr2 10747264 10749160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01544 33 580 Acyl Lipid Metabolism Gene Families AT5G24240 56.937 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01544 - - gmx:100791631 1065.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01544 2 10747264 10749160 Vimu9g00093 9 1109074 1111618 PCT