Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00088 ATGAAAGAGAAAGTAAAGTTGCAGTTTTTATCTTCCTTGTTAACCTTATTCATCTGTGTCTATGCCGCTTACACTGAAACACTTAACTCCCAAACCCTCATTCTCCGTAACCATAACCTCCCCAACCCACCCACACTCTCTTGGCCCGAATCCACCACCTCTGGCTCCGATCCCGAACCCGACCCATCCACCATCTCCGTTCATCTCCACCACATAGACGCACTCTCTCTCAACAAAACCCCCTCCCAACTCTTCCACCTAAGGCTCCAACGCGACGGCGCAAGAGTCAAAGCTCTCTTCTCCTTTGCCTCATTGAACCAAACCCGAACTACCTCTTCTGGGTCGGGTTTCAGCAGCTCCGTGATCTCGGGCCTCTCACAGGGTAGCGGTGAGTACTTCACACGCCTAGGCGTGGGAACTCCTCCGAAGTATGTCTACATGGTGCTTGACACTGGAAGCGACGTCGTTTGGCTCCAATGCAAACCCTGCGCCAAATGCTACTCCCAAACTGACGAAATCTTCGATCCTTCAAAGTCCTCATCTTTCGCCGGAATATCCTGCTCCTCCCCCCTCTGCCGCCGCCTCGACTCGCCAGGATGCAGCCGGAAAAGCAGCAACTGCCAGTATCAGGTTTCCTACGGCGACGGGTCGTTCACGTTCGGAGATTTCTCAATGGAAACTCTCACTTTCCGACGAGCGCAAGTCCCGCGTGTGGCTCTCGGCTGTGGCCACGACAACGAGGGCCTCTTTGTTGGCGCCGCAGGTTTGTTGGGCCTAGGTCGCGGCGGGTTGTCGTTTCCAACCCAAGCCGGAACCCGGTTCAGCAACAAATTTTCATACTGTTTAACTGACCGAACCGCTTCCACCAAACCGTCTTCGATTGTGTTTGGCGACTCAGCTGTTTCGCGAACCGCGCGGTTCACTCCTATAATTAATAACCCTAAACTCGACACCTTTTACTATCTCGAGTTACTTGGCATCAGCGTTGGCGGCGCGCCGGTTCGAGGCATTTCGGCTTCGCTATTTCGTCTCGACTCGACCGGGAATGGTGGAGTGATCATTGACTCGGGGACCTCCGTAACGCGCCTCACGCGACCTGCTTACGTGGCTCTTAGAGACGCGTTTCGGGTCGGAGCTTCGCATTTGAAACGCGCGCCCGAGTTCTCGCTTTTCGACACTTGTTATGATCTTTCGGGGCTGCCGGAAGTTAAGGTTCCGACCGTGGTGTTGCATTTTCGTGGTGCTGATGTGTCCTTGCCGGCTGCGAATTATCTCATTCCGGTGGATAACAGCGGCAGATTCTGCTTTGCTTTCGCCGGAACAATGAGTGGGCTTTCTATCATTGGGAATATTCAACAGCAAGGATTTCGGGTTGTGTTTGATTTGGCGGGTTCTCGGGTAGGATTTGCCCCAAGAGGGTGCGCGTGA 1428 0.5385 MKEKVKLQFLSSLLTLFICVYAAYTETLNSQTLILRNHNLPNPPTLSWPESTTSGSDPEPDPSTISVHLHHIDALSLNKTPSQLFHLRLQRDGARVKALFSFASLNQTRTTSSGSGFSSSVISGLSQGSGEYFTRLGVGTPPKYVYMVLDTGSDVVWLQCKPCAKCYSQTDEIFDPSKSSSFAGISCSSPLCRRLDSPGCSRKSSNCQYQVSYGDGSFTFGDFSMETLTFRRAQVPRVALGCGHDNEGLFVGAAGLLGLGRGGLSFPTQAGTRFSNKFSYCLTDRTASTKPSSIVFGDSAVSRTARFTPIINNPKLDTFYYLELLGISVGGAPVRGISASLFRLDSTGNGGVIIDSGTSVTRLTRPAYVALRDAFRVGASHLKRAPEFSLFDTCYDLSGLPEVKVPTVVLHFRGADVSLPAANYLIPVDNSGRFCFAFAGTMSGLSIIGNIQQQGFRVVFDLAGSRVGFAPRGCA 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00088 475 PRINTS Pepsin (A1) aspartic protease family signature 446 461 IPR001461 GO:0004190|GO:0006508
Vimu9g00088 475 PRINTS Pepsin (A1) aspartic protease family signature 352 363 IPR001461 GO:0004190|GO:0006508
Vimu9g00088 475 PRINTS Pepsin (A1) aspartic protease family signature 138 158 IPR001461 GO:0004190|GO:0006508
Vimu9g00088 475 FunFam Aspartyl protease family protein 2 298 474 - -
Vimu9g00088 475 SUPERFAMILY Acid proteases 126 474 IPR021109 -
Vimu9g00088 475 FunFam aspartyl protease family protein 2 109 296 - -
Vimu9g00088 475 CDD cnd41_like 131 474 IPR033873 -
Vimu9g00088 475 Gene3D Acid Proteases 106 295 IPR021109 -
Vimu9g00088 475 Pfam Xylanase inhibitor C-terminal 320 470 IPR032799 -
Vimu9g00088 475 Pfam Xylanase inhibitor N-terminal 132 298 IPR032861 -
Vimu9g00088 475 PANTHER ASPARTYL PROTEASES 34 468 IPR001461 GO:0004190|GO:0006508
Vimu9g00088 475 Gene3D Acid Proteases 296 475 IPR021109 -
Vimu9g00088 475 ProSiteProfiles Peptidase family A1 domain profile. 132 470 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00088 Vimu-Chr9 1082782 1084209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00088 107 474 Miscellaneous Gene Families AT1G77480 28.429 1.81e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00088 K22683 - gmx:100808163 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00088 9 1082782 1084209 Vimu9g00088 9 1082782 1084209 ECH
Vimu2g01541 2 10726126 10729663 Vimu9g00088 9 1082782 1084209 PCT