Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01541 ATGGAAGGGAAGAAGAAAACCACAAATGGCCTTCTCTTCCTGTCTCTCGCCCTCGCCCTCTCTCTCTCAGCCGCCGCAACCCTCCCATTCCAACTCCAAACCCAAACCTTAACTCTCCACTCCCTCCCCCACCCACCCACTCTCTCATGGCCCGAAGCCGAAGCCCTTGCAGAACCCGACCCGGAAGATGCTCTCTCCCTTAACCTGCACCACATAGATGCACTCTCCTCCGATAAAACCCCGGAGCAGCTCTTCCACCTCAGGCTCAAACGCGACGCCAAAAGAGTCGAATCCCTACTCACACTCGCGGCCCTCAACAGCAGCCACGCGGGCAGATCCGGCTCTGGTTTCAGCAGCTCCATCATATCCGGTCTAGCACAAGGAAGCGGCGAGTACTTCACCCGCATAGGCGTGGGTACTCCCGCTAGGTACGTCTACATGGTCTTGGACACCGGAAGTGACGTCGTTTGGCTCCAATGCGCCCCCTGCCGCAAATGCTATTCCCAAACCGACCCTGTTTTTGACCCCAGCAAATCCCGTACTTACGCCGGAATCCCCTGTGGAGCCCCTCTCTGCCGCAGGTTAGACTCTCCCGGCTGTAACAAGAACAAGGTTTGCCAGTACCAGGTTTCCTACGGCGACGGTTCCTTCACATTTGGAGATTTTTCCACCGAGACACTGACGTTTCGAAAGACAAGAGTCACCCGCGTCGCGCTCGGCTGTGGCCACGACAACGAAGGACTCTTCATAGGCGCTGCTGGTTTATTGGGTCTGGGTCGGGGCAGGTTATCTTTTCCTGTACAGACAGGACGCCGGTTCAACCAGAAGTTCTCTTACTGCCTCGTGGACCGTTCAGCCTCGGCCAAACCATCCTCTGTTGTCTTTGGAAATTCCGCTGTTTCCCGAACTGCGCGGTTCACTCCTCTCCTCAAGAACCCCAAGCTCGACACCTTCTACTACGTGGAGCTCCTCGGGATCAGTGTTGGTGGCACGCCGGTGCGCGGCTTATCCGCTTCGCTATTCCGCTTAGACGCCGCCGGGAACGGCGGAGTCATCATCGACTCGGGCACATCCGTCACCCGCTTGACCCGACCCGCTTACATTGCTCTCCGGGACGCGTTCCGCGTCGGAGCCTCTCGCCTGAAGCGAGCACCGGAGTTCTCCCTCTTCGACACGTGTTTCGATCTGTCTGGGCTCACAGAAGTGAAAGTGCCGACTGTGGTGCTGCATTTCCGCGGTGCCGATGTGTCACTACCGGCGACGAATTACTTGATTCCAGTGGATAATAGCGGGAGCTTCTGCTTCGCTTTTGCGGGAACCATGAGCGGTTTGTCCATAATTGGTAACATACAGCAACAAGGATTCCGGGTATCATACGACCTGGCGGGTTCTCGGGTCGGGTTTGCTCCGAGAGAGGCAAAGACCTTGTGGAGGCGCAACGGAGGTGCGACGATAACAAATCGATGGTGCAACAAGGTTGCGGCAACTGCACAAGGACGTTGGTTGATTGATTCATCAGGGAATTACGGATTTGATTCATCTGGGAAAGTGGATTTGATTCATCTGCAGATTGATTCATATGGGAATTAG 1590 0.5597 MEGKKKTTNGLLFLSLALALSLSAAATLPFQLQTQTLTLHSLPHPPTLSWPEAEALAEPDPEDALSLNLHHIDALSSDKTPEQLFHLRLKRDAKRVESLLTLAALNSSHAGRSGSGFSSSIISGLAQGSGEYFTRIGVGTPARYVYMVLDTGSDVVWLQCAPCRKCYSQTDPVFDPSKSRTYAGIPCGAPLCRRLDSPGCNKNKVCQYQVSYGDGSFTFGDFSTETLTFRKTRVTRVALGCGHDNEGLFIGAAGLLGLGRGRLSFPVQTGRRFNQKFSYCLVDRSASAKPSSVVFGNSAVSRTARFTPLLKNPKLDTFYYVELLGISVGGTPVRGLSASLFRLDAAGNGGVIIDSGTSVTRLTRPAYIALRDAFRVGASRLKRAPEFSLFDTCFDLSGLTEVKVPTVVLHFRGADVSLPATNYLIPVDNSGSFCFAFAGTMSGLSIIGNIQQQGFRVSYDLAGSRVGFAPREAKTLWRRNGGATITNRWCNKVAATAQGRWLIDSSGNYGFDSSGKVDLIHLQIDSYGN 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01541 529 Gene3D Acid Proteases 116 293 IPR021109 -
Vimu2g01541 529 SUPERFAMILY Acid proteases 125 473 IPR021109 -
Vimu2g01541 529 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 147 158 IPR001969 GO:0004190|GO:0006508
Vimu2g01541 529 FunFam aspartyl protease family protein 2 109 295 - -
Vimu2g01541 529 Pfam Xylanase inhibitor C-terminal 319 469 IPR032799 -
Vimu2g01541 529 CDD cnd41_like 131 470 IPR033873 -
Vimu2g01541 529 Gene3D Acid Proteases 294 476 IPR021109 -
Vimu2g01541 529 ProSiteProfiles Peptidase family A1 domain profile. 132 469 IPR033121 -
Vimu2g01541 529 PANTHER ASPARTYL PROTEASES 14 467 IPR001461 GO:0004190|GO:0006508
Vimu2g01541 529 Pfam Xylanase inhibitor N-terminal 132 297 IPR032861 -
Vimu2g01541 529 FunFam Aspartyl protease family protein 2 297 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01541 Vimu-Chr2 10726126 10729663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01541 122 476 Miscellaneous Gene Families AT1G77480 26.546 6.02e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01541 K22683 - gmx:100794269 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01541 2 10726126 10729663 Vimu9g00088 9 1082782 1084209 PCT