Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00059 ATGAGTGGTTACAACCCCATATTACTGGTGATCATCAGCTTGGTCATAGGTTTCGTAATTCGATGGTTGCTGTTCAAAACGGGATTGATACAGAGCATAAGAAAAGCGTTGAGAAGGGTGCAGGATTTGTTCCACGTCCACCAGTTCCTCAAAGTCCCCGAATTCAACGAAGCCATGCAACGGAATCACTTTCACCGCAAACTTTCTCTCTATTTGCATTCTCTTCCTTCCTTAGAGGACACTGATTTCACCAATCTCATTTCCGGTCACGATCACAACGACATCGTTTTGCGCCTCGACCCAGACCAAACCATCCAGGACAATTTTCTAGGGGCCACACTCTTCTGGTTCGAACAAAAAACCCAACCGGACCGGATTTCATCCTTCGTTCTCAAAATTAGAAAAACCGATAAACGCCGAATCCTCCGCCAGTACCTCCGCCATATCAATACCGTCGCCGACGAGATGGAGAACCAAAGGAAGCGCCATTTGCGGTTGTTCATGAACGTCGATCCCGGCGAAGGCAGCAGGGGAGAAACGCGATGGAGATCAGCTCCGTTCACTCATCCAGCGACTTTTGAAACGATAGCTATGGAGAAGGATCTCAAGAACAGAATCAAATCTGATATCGAGTCGTTTCTCAAAGCCAAGCAATACTACCGTAAACTCGGCCGCGCGTGGAAGCGGAGCTTTCTATTGTACGGTGCCTCCGGCACCGGAAAATCGAGCTTCGTTGCTGCGATGGCGAACTTTCTCCGCTACGACGTGTACGACGTGGACCTCTCGAAGATTCGCTGCGATTCGGATCTTAAGTTTCTCCTAATGGAAACGACGGCGAAGTCGATCGTCGTGATAGAGGATCTCGACCGATTTCTCGAACCGCAAACGGAATCTGCGGTTACGGTTAGGGGGATCCAGAGCTTCATGGACGGCATTCTGAGCGCGTGTTGCGGTGAGGAGAGGGTGATGGTGTTCACGATGAACAGCAAGGAGTGGGTGGACCCGAACTTGATGCGGCCGGGTCGGGTCGACGTGCACATCCATTTTCCGGTTTGCGATTTCTCGGCATTCAAGACGCTTGCGAGCAGCTACCTTGGAGTGAGGGAGCACAAGCTGTTCGCGCAGGTTGAGGATATTTTCCGGCAGGGTGCTAGTCTCAGTCCCGCCGAGATCAGCGAGTTGATGATCGCGAACCGGAACTCGCCGAGTCGGGCCATAAAATCGGTAATCGGGGCGCTCCAATCGGATGGTGATGGGAGAAAGTACGCGGATATGATTGGACGGCAGATAGGGGTTGATGACGTGGACGTACCGTCCTTCGGTGGGGACGAGTTATCTACGGTTAAAGATTCGCGGAAGTTTTATGGTTTCTTCAAAAAACGGAACGGCAGAAGAACAAACTACCCCAAAATCCAATCCCTTGGCCCGACAATAGATAAAAATTGA 1446 0.509 MSGYNPILLVIISLVIGFVIRWLLFKTGLIQSIRKALRRVQDLFHVHQFLKVPEFNEAMQRNHFHRKLSLYLHSLPSLEDTDFTNLISGHDHNDIVLRLDPDQTIQDNFLGATLFWFEQKTQPDRISSFVLKIRKTDKRRILRQYLRHINTVADEMENQRKRHLRLFMNVDPGEGSRGETRWRSAPFTHPATFETIAMEKDLKNRIKSDIESFLKAKQYYRKLGRAWKRSFLLYGASGTGKSSFVAAMANFLRYDVYDVDLSKIRCDSDLKFLLMETTAKSIVVIEDLDRFLEPQTESAVTVRGIQSFMDGILSACCGEERVMVFTMNSKEWVDPNLMRPGRVDVHIHFPVCDFSAFKTLASSYLGVREHKLFAQVEDIFRQGASLSPAEISELMIANRNSPSRAIKSVIGALQSDGDGRKYADMIGRQIGVDDVDVPSFGGDELSTVKDSRKFYGFFKKRNGRRTNYPKIQSLGPTIDKN 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00059 481 SMART AAA_5 227 353 IPR003593 GO:0016887
Vimu9g00059 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 409 IPR027417 -
Vimu9g00059 481 Pfam Domain associated at C-terminal with AAA 29 116 IPR025753 -
Vimu9g00059 481 Coils Coil 142 162 - -
Vimu9g00059 481 Pfam ATPase family associated with various cellular activities (AAA) 232 350 IPR003959 GO:0005524|GO:0016887
Vimu9g00059 481 PANTHER BCS1 AAA-TYPE ATPASE 46 414 - -
Vimu9g00059 481 Gene3D - 184 351 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00059 Vimu-Chr9 745078 746523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00059 186 395 Miscellaneous Gene Families AT5G53170 24.554 2.06e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00059 - K08900 gmx:100787809 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00059 9 745078 746523 Vimu9g00059 9 745078 746523 ECH
Vimu2g01516 2 10499705 10502870 Vimu9g00059 9 745078 746523 PCT