Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01516 ATGAGCGTCTTTGCCATGATTCTTCTCAGTCCCATATTTCTGTTAACCCTCGCCGCCGCGGCCACCGCCACCTTCCTTTTCGCGGTGGTTGGGGCCGTGCTGTTCCAAACGGGGTGCGGCAAGAGGGTATGGAGAAGAATGGAAGATTGGTTCCACGTGTATCAATTCCTCACAGTACCTGAACTCAACCAAACCAAACGCCACAACCACCTCTACACCAAGCTCTCCCTATACTTACATTCCCTACCTTCCATCCAAGACTCCCACTTCGCCAACCTCGTCACTGGGAAGAACCAAAACGATGTCGTCCTCTGCCTCGCCCCCAACCAAACCATCCAGGACCATTTTCTCGGAGCCACAGTCTACTGGTTCAACCAACCCGCTCATCCCAACCCAGAAGGAACCGGAACCTACGTTCTCAAGATCAGGAAGGTGGACAAGCGCCGCATCCTCCGTCCTTATCTTCAGCACATTCACGCCGTAGCCGACGAAATCGAGCTGCAAGGGAAGCGCGACTTGCGCCTCTTCACCAACAGTGTCGATGAGTTTGGCCAGTGGAGATCCGTTCCGTTTACGCATCCTTCCACGTTCGACACCATCGCCATGGAACCGGATCTCAAAAGCAAGGTCAAATCCGATCTCGAATCCTTCCTCAGAGCGAAACAGTACTACCACCGCCTCGGCCGCGTCTGGAAACGGAGCTTCCTCCTCTATGGTCCCTCCGGTACCGGAAAATCGAGCTTCGTCGCCGCCATGGCCAAATTCCTCTCCTACGACGTGTTCGACATCGACTTGAATAAAATCCCTAGCGATTCGGATCTGAAATTGCTCCTCCTGCATACGACGCCGAAATCGGTGGTGGTGATCGAGGACCTGGACCGGTTTGTGGCGGAGAAAACGGAGAGAATAAGTGTTTCGGGGATACTAAACTTTATGGACGGGCTTATAACCTCGTGTTGCGCAGAAGAGAGAGTGATGGTGTTCACGATGAACACGAAGGAGCATGTTGACCCGAACCTGCTCCGTCCGGGTCGGGTCGATGTGCATATCCATTTTCCGCTCTGTGATTTTTCGGCGTTTAAGACGCTGGCGAATAGTTACCTTGGGGTGAAGGACCATAAGCTGTTCCCTCAAGTGCAAGAGATTTTCCAAAACGGTGCGAGTTTGAGTCCCGCTGAAATCGGCGAGTTGATGATCGCGAACCGGAACTCTCCAAGTCGGGCTATTAGATCAGTCATCACCGCATTGCAAACCGACGGTGATGGCAGGGGGTGCGGCTTGATCGGACGGCAAAAGGAGGTTGATGAATTGGATGAACCGGATGGGGTTGTCTGCGGTGAGGGTGTTCATACGGTTAAGGATTTGCGGAGACTGTACAGTTTTTTCAGATTCAGGGTTACGAGAAAATCTTCATCCTCCAATTCTTCCTTGCCCGCGAGTCCATTGCGATAG 1452 0.5289 MSVFAMILLSPIFLLTLAAAATATFLFAVVGAVLFQTGCGKRVWRRMEDWFHVYQFLTVPELNQTKRHNHLYTKLSLYLHSLPSIQDSHFANLVTGKNQNDVVLCLAPNQTIQDHFLGATVYWFNQPAHPNPEGTGTYVLKIRKVDKRRILRPYLQHIHAVADEIELQGKRDLRLFTNSVDEFGQWRSVPFTHPSTFDTIAMEPDLKSKVKSDLESFLRAKQYYHRLGRVWKRSFLLYGPSGTGKSSFVAAMAKFLSYDVFDIDLNKIPSDSDLKLLLLHTTPKSVVVIEDLDRFVAEKTERISVSGILNFMDGLITSCCAEERVMVFTMNTKEHVDPNLLRPGRVDVHIHFPLCDFSAFKTLANSYLGVKDHKLFPQVQEIFQNGASLSPAEIGELMIANRNSPSRAIRSVITALQTDGDGRGCGLIGRQKEVDELDEPDGVVCGEGVHTVKDLRRLYSFFRFRVTRKSSSSNSSLPASPLR 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01516 483 SMART AAA_5 231 356 IPR003593 GO:0016887
Vimu2g01516 483 Pfam ATPase family associated with various cellular activities (AAA) 236 354 IPR003959 GO:0005524|GO:0016887
Vimu2g01516 483 Pfam Domain associated at C-terminal with AAA 44 123 IPR025753 -
Vimu2g01516 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 415 IPR027417 -
Vimu2g01516 483 Gene3D - 187 354 IPR027417 -
Vimu2g01516 483 PANTHER BCS1 AAA-TYPE ATPASE 50 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01516 Vimu-Chr2 10499705 10502870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01516 227 352 Calmodulin-binding Proteins AT3G56690 30.496 1.81e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01516 - K08900 gmx:100776680 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01516 2 10499705 10502870 Vimu9g00059 9 745078 746523 PCT