Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00044 ATGTGTGAAAGTGGAGAAAACAACTTGGGAGAAGTTGCAGAGACCAATCTTCCATGCCTCCATCATCCGCAGAGAAAGAAGGTGGTGATTAAAGATATTCCAAAAGGGTTTTTGCCGATCAAGGTAGGGCAAGGTGAAGAGCAAGAGAAAATTGTCATGCCTGTGATGTATCTCAACCACCCTTTGTTTTCTCAGCTACTCAAAGAGGCAGAAGAAGAGTATGGTTTTGATCAGCAAGGAACCATAATCATCCCTTGCCATCTCAAGGACTTTAGGTATGTTCAAGACCTCATTCACAAGGACATATCCAACCAACACCAACACCAACACCATGTCATTAGATGTTTTAAATCTGAGTAA 360 0.4194 MCESGENNLGEVAETNLPCLHHPQRKKVVIKDIPKGFLPIKVGQGEEQEKIVMPVMYLNHPLFSQLLKEAEEEYGFDQQGTIIIPCHLKDFRYVQDLIHKDISNQHQHQHHVIRCFKSE 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00044 119 Pfam Auxin responsive protein 30 97 IPR003676 GO:0009733
Vimu9g00044 119 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 27 93 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00044 Vimu-Chr9 534921 535280 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00044 32 106 Calmodulin-binding Proteins AT5G20810 41.333 1.97e-16 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00044 K14488 - pvu:PHAVU_010G117400g 196.052
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01508 2 10455868 10456623 Vimu9g00044 9 534921 535280 PCT