Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01508 ATGGGCACAACTGTCCTTGATCGTACGTCCACAAAAGATCCGTTGATCACAGTGGTGACAAAGATCGGACGGAGCAGAGTTAAAGTGAGTGGTGAAGCACATGTTACTCCCTTACCTGCTTCCACAAAGCAGCAATCACACTCTCACACCCTTGGCGCTTTTTCCTTGTTTTCTTTTGAGCTTTTTCCAGAAACTCTCACAAACATTCAGACCTCCTTTCTGTATATTGTTTTTGCAGTCATGGGTGGCAGTGGGGAGAAGAGAGTGAAGGGTTTTCAGGGGAAGAGAGGAGTGCCGAAAGGCTTTTTGGCCATAAAGGTGGGTCAAGGAGAAGACCAACAACGGTTTGTGGTGCCAGTCATCTACTTCAATCACCCACTCTTCATGCAGCTTCTCAAGGAAGCAGAGGAAGAGTACGGCTTCGATCAAAAGGGAACCATAACCATCCCTTGTCACGTCGAGCAGTTCAGGAACGTTCGTGGCATCATCGACAGCGAAAAGTCTCTCCTTCACCACAATCACGCTCGCTGCTTCGGCTTCTGA 543 0.4843 MGTTVLDRTSTKDPLITVVTKIGRSRVKVSGEAHVTPLPASTKQQSHSHTLGAFSLFSFELFPETLTNIQTSFLYIVFAVMGGSGEKRVKGFQGKRGVPKGFLAIKVGQGEDQQRFVVPVIYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEQFRNVRGIIDSEKSLLHHNHARCFGF 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01508 180 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 88 158 IPR003676 GO:0009733
Vimu2g01508 180 Pfam Auxin responsive protein 95 159 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01508 Vimu-Chr2 10455868 10456623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01508 82 173 Calmodulin-binding Proteins AT5G20810 41.304 3.12e-18 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01508 K14488 - var:108342322 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01508 2 10455868 10456623 Vimu9g00044 9 534921 535280 PCT