Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00023 ATGTCTTTCACTGCAACCAAGTTCGCACCCTCTCCTCTTCCTCTCAATTCCACCACCCCCAGATCCAATGACAAGCCTCTCTCTTTCTCCTTCGATCACTTCAAAACCAACCCTTCTTCCTCTTTCCTTGGATCCAATCGCAAGCTTCTTCGCTTCACTGCTCTTGCCAAACCTCGTGCTCAGACTCGTGCTTCTACCCCTGTTGCTGATGTTCTTCTCCAGCAAACCTCCAATCTGGTGACCCTTTCTCCTTCTTTCTTCATTGAAAAATCCCTGCTTTCGTGGATGCGTATTGGTTCTCTGACATGGCTTATTACTAAAGAGGAAGGGTTGGAGCTGTATGAAGACATGATACTAGGGAGGTTCTTCGAGGACAAGTGTGCTGAGATGTATTATAGGGGCAAAATGTTTGGTTTTGTTCACTTGTACAATGGCCAAGAGGCTGTGTCGACTGGGTTCATCAAGCTTCTGAAGAAGGAGGATTATGTAGTGAGCACCTACAGAGATCATGTTCATGCATTGAGTAAGGGGGTCCCCTCTCGAGCCGTAATGAGTGAACTGTTTGGAAAGGCAACAGGATGCTGCCGAGGCCAGGGCGGTTCAATGCATATGTTCTCAAAAGAGCACAACATGCTTGGCGGTTTTGCATTCATTGGTGAAGGAATTCCAGTGGCCACTGGGGCTGCATTTTCCAGCAAATATAGAAAGGAGGTGTTGAATGAGGCAGATGCTGATCAGGTGACATTGGCTTTTTTCGGAGATGGGACTTGTAACAATGGCCAATTCTATGAATGCCTGAACATGGCAGCTCTGTGGAAATTGCCAATTGTATTTGTGGTGGAGAATAATTTGTGGGCTATTGGGATGTCACATCTCAGAGCAACATCAGATCCTCAGATATGGAAGAAAGGACCAGCGTTTGGAATGCCAGGGATTCATGTTGATGGGATGGATGTTTTGAAGGTCAGAGAGGTGGCAAAGGAGGCAATTGAAAGGGCTAGAAGGGGAGAGGGACCAACCCTAGTGGAATGTGAGACCTATAGATTTAGAGGACATTCATTGGCTGACCCTGATGAGCTTCGTGACCCTGCTGAGAAGGAACACTATGCTGGTAGGGACCCCATCACTGCACTGAAACAATACCTTTTTGAGAACAATTTAGCCAGTGAGCAAGAATTGAAGGCCATAGAGAAGAAAATCGATGAGATTCTTGATGATGCAGTTGAGTTTGCAGACAACAGCCCTCTTCCACCCCGTAGTCAGCTTCTGGAGAATGTGTTTGCTGATCCAAAAGGCTTTGGAATTGGACCAGATGGAAGGTATAGATGTGAGGATCCAAAATTCACTGAAGGCACTGCTCAAGTCTAA 1368 0.4649 MSFTATKFAPSPLPLNSTTPRSNDKPLSFSFDHFKTNPSSSFLGSNRKLLRFTALAKPRAQTRASTPVADVLLQQTSNLVTLSPSFFIEKSLLSWMRIGSLTWLITKEEGLELYEDMILGRFFEDKCAEMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDYVVSTYRDHVHALSKGVPSRAVMSELFGKATGCCRGQGGSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRKEVLNEADADQVTLAFFGDGTCNNGQFYECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIWKKGPAFGMPGIHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKEHYAGRDPITALKQYLFENNLASEQELKAIEKKIDEILDDAVEFADNSPLPPRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAQV 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00023 455 MobiDBLite consensus disorder prediction 1 21 - -
Vimu9g00023 455 FunFam Pyruvate dehydrogenase E1 component subunit alpha 85 436 - -
Vimu9g00023 455 Coils Coil 386 413 - -
Vimu9g00023 455 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 105 430 IPR029061 -
Vimu9g00023 455 CDD TPP_E1_PDC_ADC_BCADC 113 411 - -
Vimu9g00023 455 Gene3D - 77 436 - -
Vimu9g00023 455 Pfam Dehydrogenase E1 component 117 417 IPR001017 GO:0016624
Vimu9g00023 455 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 96 438 - -
Vimu9g00023 455 NCBIfam pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 107 428 IPR017597 GO:0004739|GO:0006086|GO:0043231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00023 Vimu-Chr9 221891 224898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00023 5 455 Acyl Lipid Metabolism Gene Families AT1G01090 73.614 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00023 K00161 - gmx:100811207 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00023 9 221891 224898 Vimu9g00023 9 221891 224898 ECH
Vimu10g00083 10 471191 473587 Vimu9g00023 9 221891 224898 PCT