Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02676 ATGGATAGGGCATTGATGGTGGTTCCTTGGAAGAGTCTCTTGAAACAAGAATTCAATGTCATTAATAACTGGTCTTGGCTGGCTGCAGCTTGTTTTCTGTTTAGAGTTTTGTATATTTCAAAATTCCTATTTGGAGGAAGGTTGATATTTGGACCGGATGCTAGGTCACTGCTTGTTACCTTGCTGCTGATCATTGTTCCAGTTATCGTCTTTTGTGTATTTGTAGCAAGACATCTTCGGCATGAATTTTCTTCATATAATGCAGGATATGCTATTTTGGTTGTGGCAGTTCTCTTTAATATTTATGTGTTGATCCTTCTCTTTCTTACTTCCTCACGTGATCCGGGTGTTATTCCAAGGAATTTACATCCACCAGAGGAAGAGTTCCGTTATGACTCTTCAGTTTCAGTTGATATTGGGGGTCGCCAAACTCCAAGCCTTCAGTTCCCTCGAACAAAAGAAGTAATGGTCAATGGCCACCCCGTGAGGGTGAAATATTGTGATACATGTATGCTGTATCGTCCACCTCGTTGTTCACATTGCTCCATTTGCAACAATTGTGTTGAACGTTTTGATCACCATTGCCCTTGGGTGGGCCAATGTATTGGGCTGAGGAACTACCGTTACTTCTTTCTGTTTGTTTCTTCAGCCACTATTCTATGTATCTATGTGTTTTCCATCTCAGCTTTTTACATCAAGGTTCTGATGAATAATGATCACGGGACAGTTTGGGGGGCAATGAAAGAATCCCCTGCATCAGTTATATTAATGGCATACTGTTTCATCTCTTTGTGGTTTGTTGGTGGACTTACTGGCTTTCATTTGTACCTTATTGGCACAAATCAGACTACCTATGAGAACTTTCGGTATAGAGCCGATAACAGGTTCAATGTTTATAACCGTGGTTGTTTAAACAATTTCTTGGAAGTATTTTGTACAAAAGTGAAGCCCTCAAGGAACAATTTTCGAGCTTTTGTCCAAGAGGAGGTACTAAGGCCACCCCCTCCAATCATTTCCCGGGAATCTGAACCGGATCTGGGAGGAGACCCTCGCTCAAAAGTTGAAGACGATCTAGATATTGGTGAAGACCTGTTAAAGATATCACAGCGCCGGAATATTGAAGAAATTGATGAGGACATCCGGAGTAGAGGGAGTAATGGGCCTCCCCATAATACATCTGAAGTTGATTCAGCTTTGGGTTCAGATCGCCGGGCCCCAACAATTCGATCCGAAGCAAGGCACTCAAGTGAGGGTAGAAGTGAAAGCTGGGAAATTGCCTCTGAGGTCCTTGCCAATTCAAATTTAACTGAAAGTAGAGGCCATGTTGCATCAAAGGAGGTGCGCCAAAAACTTGGTGGTTCTTTCTAA 1368 0.424 MDRALMVVPWKSLLKQEFNVINNWSWLAAACFLFRVLYISKFLFGGRLIFGPDARSLLVTLLLIIVPVIVFCVFVARHLRHEFSSYNAGYAILVVAVLFNIYVLILLFLTSSRDPGVIPRNLHPPEEEFRYDSSVSVDIGGRQTPSLQFPRTKEVMVNGHPVRVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRYFFLFVSSATILCIYVFSISAFYIKVLMNNDHGTVWGAMKESPASVILMAYCFISLWFVGGLTGFHLYLIGTNQTTYENFRYRADNRFNVYNRGCLNNFLEVFCTKVKPSRNNFRAFVQEEVLRPPPPIISRESEPDLGGDPRSKVEDDLDIGEDLLKISQRRNIEEIDEDIRSRGSNGPPHNTSEVDSALGSDRRAPTIRSEARHSSEGRSESWEIASEVLANSNLTESRGHVASKEVRQKLGGSF 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02676 455 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Vimu8g02676 455 MobiDBLite consensus disorder prediction 334 356 - -
Vimu8g02676 455 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 63 330 - -
Vimu8g02676 455 MobiDBLite consensus disorder prediction 378 455 - -
Vimu8g02676 455 Pfam DHHC palmitoyltransferase 164 289 IPR001594 GO:0016409
Vimu8g02676 455 ProSiteProfiles DHHC domain profile. 165 215 - -
Vimu8g02676 455 MobiDBLite consensus disorder prediction 406 421 - -
Vimu8g02676 455 MobiDBLite consensus disorder prediction 426 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02676 Vimu-Chr8 37391267 37399105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02676 91 311 Lipid Metabolism Gene Families AT4G22750 28.070 1.72e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02676 K16675 - gmx:100818705 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02676 8 37391267 37399105 Vimu8g02676 8 37391267 37399105 ECH
Vimu8g02676 8 37391267 37399105 Vimu3g02899 3 43090607 43095122 PCT