Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02899 ATGGGAGCAAAGGTTCTGGTGGTTCTCTTTCTTACTTCCTCTGGTGATCCGGGCATTGTTCCAAGGAATTCTCATCCACCAGAAGAAGAGTTTCGTTATGATTCTTCTGTCTCTGCTGATGTTGGGGGAGCTGGACGGCAAACACCAAGTCTTCAGTTCCCTCGAACCAAAGAAGTTGTAGTCAACGGCATTGCTGTAAGGGTGAAATATTGTGAGACTTGTATGCTTTATCGTCCTCCTCGTTGCTCACACTGCTCCATTTGCAATAACTGTGTTGAGCGTTTTGATCACCATTGCCCCTGGGTGGGCCAGTGCATTGGTCTGGTATGA 330 0.4758 MGAKVLVVLFLTSSGDPGIVPRNSHPPEEEFRYDSSVSADVGGAGRQTPSLQFPRTKEVVVNGIAVRVKYCETCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLV 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02899 109 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 5 108 - -
Vimu3g02899 109 ProSiteProfiles DHHC domain profile. 69 109 - -
Vimu3g02899 109 Pfam DHHC palmitoyltransferase 69 107 IPR001594 GO:0016409
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02899 Vimu-Chr3 43090607 43095122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02899 68 107 Lipid Metabolism Gene Families AT4G22750 52.500 1.89e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02899 K16675 - gmx:100820208 221.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02676 8 37391267 37399105 Vimu3g02899 3 43090607 43095122 PCT