Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02663 ATGTGGTTGCAGAATGATTTGCTTCAGCTATTTCAGCCTTTTGGAGTTATAACAAAGCTTGTTATGTTGCGTGCCAAAAATCAGGCACTTCTTCAAATGCAAGATATTCCTTCTGCAGTTAATGCTTTACAATTTTATTCAAATGTTCAGCCAAGCATAAGGGGGAGAAATGTTTATGTCCAGTTTTCCTCACATCAAGAACTAACTACAATGGATCAAAATCAAGCACGAGAGGATGAGTTTTCTTTCTCTTTATCACGAACTTCTCTATTTATTCTCCTTTCTCTCTCTCTCTTCTCTTTCTCTATGCTGTCTGCTGTCGGCAACTCTCTGGATGCACAGCCAAATCGAATTCTCTTAGTTACAGTTCATCACATGCTGTATCCTATAACAGCGGATGTCCTACATCAAGTGTTTTCTCCCCATGGATTTGTGGAAAAGATTGTAACCTTTCAGAAGTCAGCTGGCTTTCAGGCTCTCATCCAGTATCAATCCCGTCAAAGTGCTGTTGCTGCCAGAAGTACACTACAGGGACGAAATATTTATGATGGTTGTTGTCAGCTGGACATTCAATACTCTAACCTTGATGAACTACAAGTGAACTATAATAATGATCGTTCAAGGGACTTCACAAACCCAAATCTGCCTACTGAACAGAAAGGTCGATCTTCACAGCCTGGATATGGTGATGCAGGAGGCATGTATTCTGGAGCAAGGACAGCTGGATTCTCACAGATGGCCAATGCTGCTGCAATTGCAGCTGCCTTTGGGGGAGGTTTGCCTCCTGGCATAACTGGAACAAATGAAAGGTGTACAATTCTTGTTGCGAATCTCAGTCCTGATAGAATAGACGAAGATAAACTGTTCAATTTGTTCTCCATTTATGGGAACATTGTCAGGATAAAACTACTCCGAAATAAGCCTGACCATGCACTTATCCAGATGGGGGATGGTTTCCAAGCTGAATTAGCGGTACATTTTCTGAAGGGAGCCATGTTGTTTGGAAAGCGGTTGGAAGTCAACTATTCAAAGTTTGCAAACATATCCCAAGGTGCTGATACACACGAGTATGTCAATTCAAATCTCAATCGATTCAACCGAAATGCTGCAAAGAATTATCGGTATTGCTGCTCCCCAACAAAAATGATCCACTTGTCCACCCTCCCACAAGACATAACTGAAGATGAGATTGTAAGCCTTTTGGAGGAACATGGTAACATTGTCAACTGCAAAGTCTTTGAGATGAATGGTAAAAAACAGGCACTTGTTCAATTTGAGACTGAGGAGCAGGCTACTGAAGCCCTTGTGTGCAAACATGCAAGTCCACTTTCTGGATCGGTTGTCCGTATCTCCTTTTCTCAGTTGCAGAATATATGA 1377 0.4168 MWLQNDLLQLFQPFGVITKLVMLRAKNQALLQMQDIPSAVNALQFYSNVQPSIRGRNVYVQFSSHQELTTMDQNQAREDEFSFSLSRTSLFILLSLSLFSFSMLSAVGNSLDAQPNRILLVTVHHMLYPITADVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVAARSTLQGRNIYDGCCQLDIQYSNLDELQVNYNNDRSRDFTNPNLPTEQKGRSSQPGYGDAGGMYSGARTAGFSQMANAAAIAAAFGGGLPPGITGTNERCTILVANLSPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFGKRLEVNYSKFANISQGADTHEYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEDEIVSLLEEHGNIVNCKVFEMNGKKQALVQFETEEQATEALVCKHASPLSGSVVRISFSQLQNI 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02663 458 CDD RRM4_PTBPH3 374 452 - -
Vimu8g02663 458 SUPERFAMILY RNA-binding domain, RBD 5 75 IPR035979 GO:0003676
Vimu8g02663 458 CDD RRM3_PTBPH3 270 344 IPR034797 -
Vimu8g02663 458 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 381 455 IPR000504 GO:0003723
Vimu8g02663 458 MobiDBLite consensus disorder prediction 205 231 - -
Vimu8g02663 458 SUPERFAMILY RNA-binding domain, RBD 116 216 IPR035979 GO:0003676
Vimu8g02663 458 MobiDBLite consensus disorder prediction 205 224 - -
Vimu8g02663 458 SMART rrm1_1 120 189 IPR000504 GO:0003723
Vimu8g02663 458 SMART rrm1_1 3 61 IPR000504 GO:0003723
Vimu8g02663 458 SMART rrm1_1 272 341 IPR000504 GO:0003723
Vimu8g02663 458 SMART rrm1_1 382 451 IPR000504 GO:0003723
Vimu8g02663 458 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 345 IPR000504 GO:0003723
Vimu8g02663 458 SUPERFAMILY RNA-binding domain, RBD 269 452 IPR035979 GO:0003676
Vimu8g02663 458 Gene3D - 116 220 IPR012677 -
Vimu8g02663 458 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 386 447 IPR000504 GO:0003723
Vimu8g02663 458 Pfam RRM-like domain 111 193 IPR021790 -
Vimu8g02663 458 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 5 436 - -
Vimu8g02663 458 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 356 - -
Vimu8g02663 458 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 83 - -
Vimu8g02663 458 Gene3D - 268 363 IPR012677 -
Vimu8g02663 458 Gene3D - 366 458 IPR012677 -
Vimu8g02663 458 Gene3D - 3 84 IPR012677 -
Vimu8g02663 458 CDD RRM2_PTBPH3 115 202 IPR034796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02663 Vimu-Chr8 37073854 37079142 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02663 K14948 - gmx:100798234 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02663 8 37073854 37079142 Vimu8g02663 8 37073854 37079142 ECH
Vimu8g02663 8 37073854 37079142 Vimu3g02903 3 43131963 43140618 PCT