Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02903 ATGTTGCGTGCCAAAAATCAGGCTCTTCTCCAAATGCAAGATGTTCCTTCTGCAGTTAATGCTTTACAATTTTATGCAAATATCCAGCCAAGTATAAGGGGGAGGAATGTTTATGTTCAGTTTTCCTCACATCAAGAACTGACAACAATGGATCAAAGTCAAGGACGAGGAGACGAGCCAAACCGAATTCTCTTAGTTACAATTCATCACATGCTGTATCCTATAACAGTGGATGTGCTGTTTCAAGTATTTTCACCCCATGGATCTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGGCTTTCAAGCTCTCATCCAGTTTCAATCACGTCAGAGTGCTGTTAATGCAAGAAGTACACTTCAGGGACGCAATATTTATGATGGTTGCTGTCAACTGGACATTCAATTCTCAAACCTTGATGAATTACAAGTGAACTACAATAATGACCGTTCAAGAGACTTCACCAACCCAAATCTCCCAACGGAGCAGAAAGGAAGACCTTCACAACCTGGATATGGTGATGCGGGAAATATGTATGCTGCTCAAGGTTCTGGAGGCAGGGCAGTTGGATTTCCACAGATGGCTAATGCTGCAGCCATTGCAGCTGCCTTCGGGGGAGGTTTGCCTCCTGGAATAACTGGAACAAATGAGAGGTGTACAGTGCTTGTATCAAATCTTAATTCTGATAGAATTGATGAGGATAAGCTATTCAACTTGTTCTCTATTTATGGGAATATTGTGAGAATTAAACTTCTCCGAAATAAACCAGATCATGCACTTATCCAGATGGGTGATGGCTTTCAAGCTGAATTGGCTGTCCACTTTCTGAAGGGAGCCGTGTTGTTTGAGAAACAGTTAGAGGTCAACTTCTCCAAGCATCCACACATAACCCAAGGTGCTGACACACGTGAATACATCAGTTCAAATCTCAACCGTTTCAACCGTAACGCAGCCAAAAACTACCGTTATTGCTGCTCTCCAACAAAGATTATCCATTTGTCCACACTCCCACAAGACATCACCGAGGAGGAGATTGTGAACCTTGTAGAGGAGCATGGAACCGTTGTCAACAGCAAAGTCTTTGAGATGAGTGGGAAAAAACAGGCTCTGGTTCAGTTTGAGAATGAGGAGCAGGCTACTGAAGCCCTTGTGTGCAAGAATGCCAGCACACTTTCTGGCTCAGTAATCCGTATCTCCTTTTCGCAGTTACAGAATATATGA 1224 0.4297 MLRAKNQALLQMQDVPSAVNALQFYANIQPSIRGRNVYVQFSSHQELTTMDQSQGRGDEPNRILLVTIHHMLYPITVDVLFQVFSPHGSVEKIVTFQKSAGFQALIQFQSRQSAVNARSTLQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDAGNMYAAQGSGGRAVGFPQMANAAAIAAAFGGGLPPGITGTNERCTVLVSNLNSDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAVLFEKQLEVNFSKHPHITQGADTREYISSNLNRFNRNAAKNYRYCCSPTKIIHLSTLPQDITEEEIVNLVEEHGTVVNSKVFEMSGKKQALVQFENEEQATEALVCKNASTLSGSVIRISFSQLQNI 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02903 407 SMART rrm1_1 221 290 IPR000504 GO:0003723
Vimu3g02903 407 SMART rrm1_1 65 134 IPR000504 GO:0003723
Vimu3g02903 407 SMART rrm1_1 331 400 IPR000504 GO:0003723
Vimu3g02903 407 MobiDBLite consensus disorder prediction 150 176 - -
Vimu3g02903 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 335 398 IPR000504 GO:0003723
Vimu3g02903 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 294 IPR000504 GO:0003723
Vimu3g02903 407 MobiDBLite consensus disorder prediction 150 166 - -
Vimu3g02903 407 Gene3D - 61 165 IPR012677 -
Vimu3g02903 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 330 404 IPR000504 GO:0003723
Vimu3g02903 407 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 328 406 - -
Vimu3g02903 407 NCBIfam hnRNP-L/PTB/hephaestus splicing factor family 1 403 IPR006536 GO:0003723|GO:0005634|GO:0006397
Vimu3g02903 407 CDD RRM3_PTBPH3 219 294 IPR034797 -
Vimu3g02903 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 299 - -
Vimu3g02903 407 SUPERFAMILY RNA-binding domain, RBD 2 56 IPR035979 GO:0003676
Vimu3g02903 407 SUPERFAMILY RNA-binding domain, RBD 60 161 IPR035979 GO:0003676
Vimu3g02903 407 Gene3D - 313 407 IPR012677 -
Vimu3g02903 407 Gene3D - 1 60 IPR012677 -
Vimu3g02903 407 Gene3D - 214 310 IPR012677 -
Vimu3g02903 407 CDD RRM4_PTBPH3 323 401 - -
Vimu3g02903 407 Pfam RRM-like domain 59 138 IPR021790 -
Vimu3g02903 407 SUPERFAMILY RNA-binding domain, RBD 218 403 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02903 Vimu-Chr3 43131963 43140618 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02903 K14948 - gmx:100819672 765.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02663 8 37073854 37079142 Vimu3g02903 3 43131963 43140618 PCT