Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02906 ATGGATACTAAGGGGAGACTTGTTGCGGGCTCACATAACCGGAATGAGTTTGTTCTCATCAATGCTGATGAAACTGCAAGGTTTTTCTCCGGCTTCACGGTGAAAGAAATAGGAAAAACTGTTTCAACCAATCAGTATCTGAGGCTTGAGGTTGACATTGCACATAATTTGCAGGTGAACGCTGTCACAGAATTGAGTGGGCAAATTTGCCAGATCTGTGGGGATGAGATAGAGATTACTGTGGATGGTGAACCGTTTGTTGCATGCAATGAATGTGCATTCCCAGTGTGTAGAACTTGCTATGAGTATGAAAGAAGAGAGGGGAACCAAGCTTGCCCTCAGTGCAAAACCAGATACAAGCGCCTAAAGGGTAGTCCCAGAGTTGAGGGTGATGAGGAAGAAGAGGACATTGATGATTTGGAAAATGAGTTTGACATTGGAAGCAATATCAGGCAGGGTCACGTTGTGGCCATACTCTCTTCTCACCACAACACTGGCCATGGTTCACAAATGAATGATCCAGGGATCACCACACCATCAGAGTTTGATGCATCTTCTGTGGCTGCTGATATTCCTCTCCTGACATATGATCACGAGGATATTGGGATTTCTGCTGATAAACATGCTCTAATTATTCCCCCATTCATGTCTCGTGGGAAACGCGTCCATCCTATGCCTTTTCCTGATTCAACTGCTGGTGGTGATGCAGTTCAACCCAGGCCTATGGATCCTAAAAAAGATTTAGCGGTTTATGGATATGGAAGTGTCGCATGGAAGGAACGAATGGAGGAGTGGAAGAAAAGGCAGAATGAAAAAACTGAGGTAGTTAAGCATGAAGGGGGTAACGATGGTGGGAAAAATGGTGACGAGCTTGATGACCCTGATTTGCCAAAGAAGTTGCCAATTAGTCCAAGCAAGATCAGTCCATATCGAATTATAGTAGTACTCCGGATTGTTGTTCTTGGCCTATTTTTTCATTATAGAATTCTCCACCCGGTCAATGACGCATATGCATTATGGCTGACATCAGTAATTTGTGAAATCTGGTTTGCCGTGTCATGGATTTTGGATCAATTTCCCAAATGGTGCCCAATTGAGCGAGAAACATACCTGGATCGTTTGTCATTGAGGTACGAGAAAGAAGGAAAGCCATCTGAATTAGCTGATATAGACGTTTTTGTTAGTACAGTTGATCCTATGAAAGAACCTCCCCTTATAACTGCAAATACAGTTCTATCCATCCTTGCTGTAGATTATCCAGTGGAGAAAGTTGCATGTTATGTCTCAGATGATGGTGCAGCTATGCTTACATTTGAAGCCCTTTCAGAGACTTCTGAATTCGCAAGAAAGTGGGTTCCATTTTGTAAGAAGTTCAGCATTGAACCTCGAGCACCTGAATGGTATTTTGCTCAGAAGGTTGACTATTTAAAAGACAAAGTGGACGCAATATTCATCAGGGAGCGTCGTGCTATCAAGAGGGAGTATGAAGAGTTCAAAGTGCGAATCAATGCATTGGTTGCAATGGCACAGAAGGTTCCGGAGGATGGCTGGACAATGCAGGATGGAACTCCGTGGCCTGGAAACAGTGTCAGGGATCATCCTGGAATGATTCAAGTTTTCCTTGGTCAAAATGGTCTTCGTGATATTGAAGGGAACGAATTACCTCGTCTTATCTACGTGTCTCGTGAGAAAAGACCAGGATTTGAACACCATAAAAAAGCTGGTGCTATGAATGCCTTGGTGCGAGTCTCAGCAGTCATTTCAAATGCTCCGTACCTACTCAATGTCGATTGTGATCACTACATAAACAACAGCAAAGCACTTCGTGAAGCCATGTGCTTCATGATGGATCCTACATCAGGAAAAAAAATATGCTATGTACAATTTCCTCAAAGATTTGATGGGATTGATCGTCATGATAGATACTCAAATCGCAATGTTGTTTTCTTTGATATAAACATGAAAGGTTTAGATGGCATCCAAGGACCAATATATGTAGGAACTGGGTGTGTTTTTAGAAGGCAGGCACTGTATGGATACGATGCCCCTGCTAAGAAGAAACCACCAAGGAAGACTTGTAACTGTTGGCCCAAATGGAACAAAAATAGGAAAGTGAAGTCAAGTCCAAGAAAGAAAATAAAAAACAAGGATGCTACAAAGCAAATACATGCACTAGAAAATATTGAAGAGGGAATTGAAGGAATTGACAGCGAGAAGTCGTGGTTAATGTCTCAACTAAAATTTGAGAAAAAATTTGGGCAATCACCTGTTTTCATAGCTTCAACGCTTATGGAAGATGGGGGTATTCCAAAAGGAGCAACATCGGCATCACTCTTGAAAGAAGCCATTCATGTCATCAGTTGCGGTTATGAAGATAAGACAGAGTGGGGGGAAGAGGTTGGATGGATATATGGTTCTGTTACAGAAGATATATTAACAGGTTTCAAGATGCACTGTCACGGTTGGCGATCTGTGTACTGCATGCCTAAAAGGCCTGCTTTTAAGGGCTCAGCTCCCATAAATCTTTCAGATCGTCTGCATCAAGTTCTCCGTTGGGCACTTGGATCTGTTGAGATCCTGTTGAGTAAGCATTGTCCTATATGGTATGGTTATGGTTGTGGCTTGAAATGGCTGGAGCGCTTTTCTTACATAAACTCAGTAGTTTATCCTTTAACATCACTTCCCTTAATTGCATACTGCACCCTGCCGGCTGTCTGTCTACTCACTGGAAAGTTCATAGTCCCAGAGATTAGCAATTACGCCAGTATCATTTTCATGGCGCTTTTCATATCCATAGCTGCAACAGGCATCCTTGAAATGCAGTGGGGAGGTGTTGGCATACATGACTGGTGGAGGAATGAGCAGTTCTGGGTGATCGGTGGTGCCTCCTCACACCTCTTCGCTCTCTTTCAGGGTTTGCTCAAGGTTCTGGCAGGAGTTAACACAAACTTCACAGTAACATCCAAAGCTGCAGATGACGGAGACTTTGCGGAACTCTACCTCTTCAAGTGGACATCATTGTTGATCCCTCCTTTGACCTTGCTCATCATTAACATAGTTGGAGTTATTGTAGGTGTTTCAGATGCAATAAACAATGGTTATGATTCATGGGGTCCTCTGTTCGGCAAACTATTTTTTGCTCTTTGGGTCATTGTCCATCTTTACCCCTTCCTCAAGGGAGTCATGGGAAAACAGGAAGGTGTTCCCACCATCATTTTGGTCTGGTCTATTCTTCTGGCTTCAATCTTCTCACTTCTATGGGTGAGGATCAACCCATTTTTGTCAAAAGATGACATTGTGTTGGAACTTTGTGGGTTGAATTGTGACTAG 3330 0.4297 MDTKGRLVAGSHNRNEFVLINADETARFFSGFTVKEIGKTVSTNQYLRLEVDIAHNLQVNAVTELSGQICQICGDEIEITVDGEPFVACNECAFPVCRTCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEEDIDDLENEFDIGSNIRQGHVVAILSSHHNTGHGSQMNDPGITTPSEFDASSVAADIPLLTYDHEDIGISADKHALIIPPFMSRGKRVHPMPFPDSTAGGDAVQPRPMDPKKDLAVYGYGSVAWKERMEEWKKRQNEKTEVVKHEGGNDGGKNGDELDDPDLPKKLPISPSKISPYRIIVVLRIVVLGLFFHYRILHPVNDAYALWLTSVICEIWFAVSWILDQFPKWCPIERETYLDRLSLRYEKEGKPSELADIDVFVSTVDPMKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFAQKVDYLKDKVDAIFIRERRAIKREYEEFKVRINALVAMAQKVPEDGWTMQDGTPWPGNSVRDHPGMIQVFLGQNGLRDIEGNELPRLIYVSREKRPGFEHHKKAGAMNALVRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKPPRKTCNCWPKWNKNRKVKSSPRKKIKNKDATKQIHALENIEEGIEGIDSEKSWLMSQLKFEKKFGQSPVFIASTLMEDGGIPKGATSASLLKEAIHVISCGYEDKTEWGEEVGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSKHCPIWYGYGCGLKWLERFSYINSVVYPLTSLPLIAYCTLPAVCLLTGKFIVPEISNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADDGDFAELYLFKWTSLLIPPLTLLIINIVGVIVGVSDAINNGYDSWGPLFGKLFFALWVIVHLYPFLKGVMGKQEGVPTIILVWSILLASIFSLLWVRINPFLSKDDIVLELCGLNCD 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02906 1109 SUPERFAMILY RING/U-box 59 138 - -
Vimu3g02906 1109 CDD mRING-HC-C4C4_CesA 68 118 - -
Vimu3g02906 1109 ProSiteProfiles Zinc finger RING-type profile. 70 116 IPR001841 -
Vimu3g02906 1109 FunFam Cellulose synthase 52 143 - -
Vimu3g02906 1109 MobiDBLite consensus disorder prediction 269 297 - -
Vimu3g02906 1109 FunFam Cellulose synthase 507 681 - -
Vimu3g02906 1109 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 540 683 IPR029044 -
Vimu3g02906 1109 Pfam Zinc-binding RING-finger 62 136 IPR027934 -
Vimu3g02906 1109 Pfam Cellulose synthase 390 1098 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu3g02906 1109 SUPERFAMILY Nucleotide-diphospho-sugar transferases 403 907 IPR029044 -
Vimu3g02906 1109 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 298 1076 - -
Vimu3g02906 1109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 143 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02906 Vimu-Chr3 43149988 43155254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02906 1 1108 Glycosyltransferase AT5G64740 75.443 0.0 1716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02906 K10999 - gmx:100806786 1889.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02641 8 36834116 36842889 Vimu3g02906 3 43149988 43155254 PCT