Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02194 ATCAGTAAACTGGTGTTTGAGTTGTCTGGTTTTATTCTGCAGGTTGTTGTGGTGATCTTCACAGTTTTGTTGCTGGGATTACAAGGAGTGAGGATTGTTGAATGCAAAGTAGCCAATGAATTTGATAGCCTTGAGTACCCTGCTATCAGCTGCAGAAAACACACTGCATTTCTGACTGATTTTGGTGGTGTTGGAGATGGAAAAACATCTAACACCAAGGCCTTTCAATATGCAATTAGCAACCTCAGTCATTATGCATCTGATGGTGGAGCTCTACTTGTTGTGCCACCAGGGACATGGCTAACAGGAAGCTTCAATCTCACAAGCCATTTCACCCTTTTCCTCCAAAGTGAAGCTACCATTCTTGCATCTCAGGATGAATCAGAGTGGCCAACACTTGCTGTTCTACCATCATATGGCAGAGGAAGAGATGCTCCCGATGGAAGATTTAGTAGTCTCATTTTTGGAACTAACCTCACCGATGTAGTAATCACTGGTTACAATGGGACAATTGATGGACAAGGATGTTATTGGTGGGACAAGTTCCACAAGGGTGAATTGAAACTCACCAGGCCTTACACAATTGAGATTATGTTCTCTAATCACATCCAGATATCAAATCTTACTTTGATCAATTCTCCATCTTGGTTTGTCCATCCAATTTACAGCAGTGACATCATAATTCAAGGGCTGACCATTCTTGCTCCTATTGACTCTCCTAACACAGATGGAATAAATCCAGATTCTTGCACCAACACTAGAATTGAAGATTGCTATATTGTCTCTGGTGATGATTGTATAGCAATAAAAAGTGGGTGGGATGAGTCTGGAATAAAATTTGGAATGCCAAGCCAACACATAATAATTAGAAGGCTTGAATGTGTATCCCCTGATAGTGCTATGATTGCTTTAGGCAGTGAAATGTCTGGTGGAATCCAAGATGTTAGAGCTGAAGACCTTACTGCTATCAACACAGAATCAGCAGTTAGAATAAAAACTGCAGTTGGTAGAGGTGGATATGTGAAAGACATATTTGTGAAAGGAATGAACTTGAAAACCATGAAGTATGTGTTTTGGATGACAGGTTCTTATGGCTCACACCCTAACCCTCACTTTGATCCCAAAGCACTTCCCAACATTACTGGAATAAACTACAGAGATGTCTTTGCAGATAATGTAACATATTCTGCAAGACTTGATGGAATTGCTAATGATCCTTTTACAGGAATCTGCATTTCTAATGTCACTATCCATAGTGGTGATAAGAAATTGCAATGGAATTGCACTGATATTGAGGGTGTGACAAGCAATGTTTATCCTAGGCCTTGTGAATTGCTGCCAGAGAAGAAAGAGAAAATTGAGTGTCCTTATCCAGATGACAAAGTTCCAATCGAAAGTGTTCAGCTGAAGACTTGTTCCTTCAAAAGTGTGTCATTCTTTTAA 1443 0.4006 ISKLVFELSGFILQVVVVIFTVLLLGLQGVRIVECKVANEFDSLEYPAISCRKHTAFLTDFGGVGDGKTSNTKAFQYAISNLSHYASDGGALLVVPPGTWLTGSFNLTSHFTLFLQSEATILASQDESEWPTLAVLPSYGRGRDAPDGRFSSLIFGTNLTDVVITGYNGTIDGQGCYWWDKFHKGELKLTRPYTIEIMFSNHIQISNLTLINSPSWFVHPIYSSDIIIQGLTILAPIDSPNTDGINPDSCTNTRIEDCYIVSGDDCIAIKSGWDESGIKFGMPSQHIIIRRLECVSPDSAMIALGSEMSGGIQDVRAEDLTAINTESAVRIKTAVGRGGYVKDIFVKGMNLKTMKYVFWMTGSYGSHPNPHFDPKALPNITGINYRDVFADNVTYSARLDGIANDPFTGICISNVTIHSGDKKLQWNCTDIEGVTSNVYPRPCELLPEKKEKIECPYPDDKVPIESVQLKTCSFKSVSFF 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02194 480 PANTHER PECTIN LYASE-RELATED 24 465 - -
Vimu8g02194 480 SUPERFAMILY Pectin lyase-like 49 477 IPR011050 -
Vimu8g02194 480 Pfam Glycosyl hydrolases family 28 152 432 IPR000743 GO:0004650|GO:0005975
Vimu8g02194 480 Gene3D - 37 439 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02194 Vimu-Chr8 28412145 28414816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02194 44 472 Glycoside Hydrolase AT3G48950 71.034 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02194 - - gmx:100812836 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02194 8 28412145 28414816 Vimu3g02999 3 43992387 43995299 PCT