Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02999 ATGTGTCCAGAACTTGGGAATTCCATTGTGATTGGTGTGATCTCCGTAATTGTGATATTGGGATCAGAAAAAGTGAAGGTTGCAGAAAGCAAGGTGGCGAATGGGGGAATTGAATACCCAGGCATTAATTGCAGAAAACACAGTGCAGTTTTGACAGATTTTGGTGGAGTTGGTGATGGCGTTACATCCAATACCAAAGCCTTTCGAAATGCAATAAGCAATCTCAGTCACTATGCATCTGACGGCGGTGCACAACTCATAGTGCCACCCGGAAAATGGCTAACGGGACCCTTTAATCTCACAAGCCATTTCACTCTTTTTCTTCACAACAAAGCTCTTATTCTTGCTTCTCAGAATGAATCGGAATGGCCTCATCTTCCCGTGTTACCTTCTTATGGAAGAGGGAGAGATGCTCCTCATGGAAGATTTAGCAGTCTAATTTTTGGAACTAACCTCACTGATATTGTAATTACAGGTAAAAATGGTAGCATTGATGGACAAGGAGCTTATTGGTGGAAGAAGTTCCATAACAAAAAGTTGACTCTGACCAGGCCATACATGATTGAGCTCATGTACTCTGATCAAATCCAGATATCATCTCTCACTTTACTCAACTCTCCATCCTATTTTATCCATCCAATTTACAGCAGTAACATAATAATGCAAGGGCTTACCATAAATGCTCCAATAAACTCTCCCAACACAGATGGGATAGATCCAGATTCATGTACAAATGTTAGGATTGAAGATTGCTACATTGTTTCTGGTGATGACTGCGTTGCAATAAAAAGTGGATGGGATGAGTATGGGATAAAATTTGCAATGCCATCTCAACACATAGTGATTAAAAGGCTTACTTGTATATCCCCTGATAGTGCGATGATTGCTTTAGGCAGTGAAATGTCTGGAGGAATCTCTGACGTTAGAGCTGAAGATCTGACTGCCATCAACACTGAATCAGCTATCAGAATAAAAACAGCAGTGGGTAGAGGTGGGTATGTGAAAGACATATTTGTGAAAGGAATGAACCTGACAACCATGAAGTATGTGTTTTGGATGACTGGCTCGTACAAATCACACCCTGATCCAGGCTATGATCCCAAAGCACTACCCAACATTACTGGGATAAATTACAGAGACGTTGTTGCAACACAGGTCAAGATGTCTGCAAGACTCCAAGGAATTTCTAACAACCCTTTCACCAATATTTGCATCTCCAATGTCACCATCCAATTCAATGAAAAACCAAAGAAGCATCAATGGAATTGCACTGATGTTTCTGGAGTCACAAACAAAGTCACTCCTCCTCCTTGCGAATTGTTGCCAGAGAAAGAGCAACTGCAGTGTCCCTTTCCAACCAACTCTCTGCCCATTGAATCTGTTAAGCTCAAGTCTTGTTCTACCAATGCCTTCTTCTAA 1419 0.4137 MCPELGNSIVIGVISVIVILGSEKVKVAESKVANGGIEYPGINCRKHSAVLTDFGGVGDGVTSNTKAFRNAISNLSHYASDGGAQLIVPPGKWLTGPFNLTSHFTLFLHNKALILASQNESEWPHLPVLPSYGRGRDAPHGRFSSLIFGTNLTDIVITGKNGSIDGQGAYWWKKFHNKKLTLTRPYMIELMYSDQIQISSLTLLNSPSYFIHPIYSSNIIMQGLTINAPINSPNTDGIDPDSCTNVRIEDCYIVSGDDCVAIKSGWDEYGIKFAMPSQHIVIKRLTCISPDSAMIALGSEMSGGISDVRAEDLTAINTESAIRIKTAVGRGGYVKDIFVKGMNLTTMKYVFWMTGSYKSHPDPGYDPKALPNITGINYRDVVATQVKMSARLQGISNNPFTNICISNVTIQFNEKPKKHQWNCTDVSGVTNKVTPPPCELLPEKEQLQCPFPTNSLPIESVKLKSCSTNAFF 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02999 472 Pfam Glycosyl hydrolases family 28 144 427 IPR000743 GO:0004650|GO:0005975
Vimu3g02999 472 PANTHER PECTIN LYASE-RELATED 29 459 - -
Vimu3g02999 472 Gene3D - 37 435 IPR012334 -
Vimu3g02999 472 SUPERFAMILY Pectin lyase-like 45 453 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02999 Vimu-Chr3 43992387 43995299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02999 37 467 Glycoside Hydrolase AT3G61490 67.045 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02999 - - gmx:100779166 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02999 3 43992387 43995299 Vimu3g02999 3 43992387 43995299 ECH
Vimu8g02194 8 28412145 28414816 Vimu3g02999 3 43992387 43995299 PCT