Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02159 ATGTTCAGCTCCAGTCCCGCCATGGGAAGCCGCAACAACACCACCCTGGAGACGGTCAGCGCTGCCGCCACAGCCATCGTTACCGCCGAATCCAGAGTCCAGCCCACCGCCGCGCCGAAAAAACGTTGGGGAGGCTGCTGGAGCCAATATTGGTGCTTTGGATCTTGTAAAAGCAGTAAAAGCAGCAAGCGAATTGGCCATGCTGTCCTTGTTCCTGAACCTGTTGCACCAACAGGTCCAACTGCTGCTGCTGCTACTGCACCACCAAATCCTTCAACTGCCATTGTAATGCCATTCATTGCCCCGCCATCTTCTCCTGCATCTTTAATCCAATCTGATCCCCCATCTGCTATTCAATCACCGCCTGGATTACTTTCACTCTCTTCTCTTGCGGCCAATGCTTACTCTTCTGGTGGTCCAGCATCCATGTTCACCATCGGTCCATATGCCTATGAGACTCAACTAGTTTCTCCGCCCGTATTTTCCAACTTCACAACTGAACCATCCACTGCTCCTTTTACTCCCCCACCCGAATCTGTGCATCAAACAACACCTTCGTCCCCAGACGTTCCATTTGCTCAATTGTTGGCATCTTCTCTGGACAGGGCTCGGAGAAGTAGTGGGAATCAAAAGTTTGCATTATACAGTTATGATTTTCAGCCTTACCAACAATATCCTGGAAGCCCAGGTGGCCAACTCATATCACCTGGATCAGCATTTTCAACTTCTGGCACTTCTACCCCATTTCCCGATAGACCCCCTACTCTTGAGTTCCGCAAAGGGGAAACACCAAAGATCTTGGGTGTTGAACACTTCTCCACCCAAAGATGGAGTTCAAGACTAGGATCTGGATCATTGACACCAGATGGTGCTGGGCAAGGTTCAAGACTTGGCTCAGGATCCGTGACTCCTGATGGTGTTGGGCTGGCTTCGCGGTTAGGTTCTGGGTGTGTGACACCTGATGGTCTGGGGCAGGAATCCAGGTTAGGTTCTGGCTGCTTGACACCCGATGGTGCCGGGCCAACCAATCAAAATATCTCTGTGGAAAACCGGATTGCTAAGGAAGCAACTCTTGCTAACTCGGACAGTGGACATCCAAGTAATGCAACATTGGTTGATCACAGAGTTTCATTTGAATTAACAGGGGAAGATGTTGCTCGGTGTCTTGCTAATAAAACTGGGGTATTGCTTCGAAATATGTCAGGGTCCTCTCAAGGTATACTGGCCAAAGACCCTGTTGACAGAGAAAGGGTGCAAAGAGACACCGATACTAGCTGTAATGTGTGTACAGAGAAAACAGATGACAAGCCAAACAATCCTGTTGGAGAAGGAGAACAATGTTTCCATAAGCAGAATTCTGTAAATTCTTCTAAAGAATTCAATTTTGACAGTAGTAAAGGAGTTGTTTCTGGTACTGGTGGCAGTGGCTCTGAGTGGTGGACTAACAGGAGGGTTGCCGGGAGGGAAGGTAGATCAGCCAACAGCTGGGCTTTCTTCCCAATGTTACAGTCAGAAATGAACTGA 1524 0.4888 MFSSSPAMGSRNNTTLETVSAAATAIVTAESRVQPTAAPKKRWGGCWSQYWCFGSCKSSKSSKRIGHAVLVPEPVAPTGPTAAAATAPPNPSTAIVMPFIAPPSSPASLIQSDPPSAIQSPPGLLSLSSLAANAYSSGGPASMFTIGPYAYETQLVSPPVFSNFTTEPSTAPFTPPPESVHQTTPSSPDVPFAQLLASSLDRARRSSGNQKFALYSYDFQPYQQYPGSPGGQLISPGSAFSTSGTSTPFPDRPPTLEFRKGETPKILGVEHFSTQRWSSRLGSGSLTPDGAGQGSRLGSGSVTPDGVGLASRLGSGCVTPDGLGQESRLGSGCLTPDGAGPTNQNISVENRIAKEATLANSDSGHPSNATLVDHRVSFELTGEDVARCLANKTGVLLRNMSGSSQGILAKDPVDRERVQRDTDTSCNVCTEKTDDKPNNPVGEGEQCFHKQNSVNSSKEFNFDSSKGVVSGTGGSGSEWWTNRRVAGREGRSANSWAFFPMLQSEMN 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02159 507 MobiDBLite consensus disorder prediction 166 191 - -
Vimu8g02159 507 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 13 506 IPR040420 -
Vimu8g02159 507 MobiDBLite consensus disorder prediction 226 250 - -
Vimu8g02159 507 MobiDBLite consensus disorder prediction 226 259 - -
Vimu8g02159 507 MobiDBLite consensus disorder prediction 278 300 - -
Vimu8g02159 507 MobiDBLite consensus disorder prediction 278 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02159 Vimu-Chr8 27950415 27954596 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02159 - - gmx:100806399 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02159 8 27950415 27954596 Vimu3g03014 3 44094700 44098040 ECH
Vimu8g02159 8 27950415 27954596 Vimu8g02159 8 27950415 27954596 ECH
Vimu8g02159 8 27950415 27954596 Vimu3g03014 3 44094700 44098040 PCT