Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03014 ATGGGAACAGTTAACAATACAGTCAATGCCGCGGCTTCGGCGATAGTAGCTGCCGAATCCAGAATCCAACCTGCCAGCTCGCCGAAAAAGCGTTGGGGAAGCTGCTGGAGCTTATATTGGTGTTTTGGACCCCATAAAAACAACAAGAGAATTGGCAACGCTGTCCTCGTTCCTGAACCTGTTGAACCAGTGGGTCAAGTTCGATCTCATCCTGCTACTGCTGCACCAAATCCTTCAACAGCCGTTGCAATGCCATTCGTTGTCCCTCCCTCTTCACCTGCATCTTTTCTGGAATCCGATCCTCCATCTGCCACTCAATCACCGGTTGGACTATTCTCTCTCAGTTCTCTCAATGTCAATGCTTCTGGTGGACCTGCATCCATTTTTGCTATAGGTCCTTATACCTACGAGACCCAGTTAGTCTCACCGCCTGTATTTTCTAACTTTACCACTGAACCATCTACTGCTCCTTTCACTCCACCTCCTGAATCTGTGCAGCTGACGACACCATCATCCCCTGAGGTGCCATTTGCTCAATTATTGGAATCTTCTCTAGATCAAGATTGTAAAAGTAAAGGTACAAATCAGAGCTTTGCATTATCCAATTATGAGTTTCAACTTTATCAACAATACCCTGGAAGCCCTGGCACCCAACTTATATCACCTGGATCAATCATTTCTACTTCTGGAAGTTCCACTCCTTTCCCTGATAGGCACCCAATTCTTGAATTCCACAAAGGGGAAGCATCAAACCTCTTGGGCTTTGAACACTTCTCGACACAAAAACTGAATTCCAGACTTGGATCAGGATCTTTGACACCAGACAGTACTGGGCAAGGTTCAGGACTAGGCTCAGGATCTTTGACACCTAATGTTGTTAAGCCAGCTTCACAACTAGGCTCTGGGTGTTTGACACCTGATGGTGCAGCACCAACTGCTGCAAATGACATCTATGTTGGAAAACCGATTTCTGAGTTAACACCCCTTGCAAATTCCGAGGACGAGTGTAAACCCAATGCAGCATTAGTCGATCACAGAGTTTCATTTGAATTGACTGGGGAGGATGTTGCACGATGTCGTCCAAATAAATCAGGGTCTCCTGTGATTGGAAACATCTCGTCGGGGTCTTCGGAGGATATACTGGTTGGAGAGCCTGTTGACAGAGAAAGGATACACTGTGATTTGTGTTCAAGGAAAACTTCAAATGACAAGCCTGAAAATCCTCCTAGAGAAGGAGAAGAGCAATGCAATTCTTCCAAAGAATTTAACTTTGACAGCAGAAAAGGTGTTGTTTCTGATAATCCTGCGAATGCCTCGGAATGGTGGACTAACAAGAAAATGGTTGGAAAGGAAAGTACATCAAGCAACGGTCCGGCATTTTTTCCAATGTTACAGTCAGAAATCGTTTAA 1410 0.4511 MGTVNNTVNAAASAIVAAESRIQPASSPKKRWGSCWSLYWCFGPHKNNKRIGNAVLVPEPVEPVGQVRSHPATAAPNPSTAVAMPFVVPPSSPASFLESDPPSATQSPVGLFSLSSLNVNASGGPASIFAIGPYTYETQLVSPPVFSNFTTEPSTAPFTPPPESVQLTTPSSPEVPFAQLLESSLDQDCKSKGTNQSFALSNYEFQLYQQYPGSPGTQLISPGSIISTSGSSTPFPDRHPILEFHKGEASNLLGFEHFSTQKLNSRLGSGSLTPDSTGQGSGLGSGSLTPNVVKPASQLGSGCLTPDGAAPTAANDIYVGKPISELTPLANSEDECKPNAALVDHRVSFELTGEDVARCRPNKSGSPVIGNISSGSSEDILVGEPVDRERIHCDLCSRKTSNDKPENPPREGEEQCNSSKEFNFDSRKGVVSDNPANASEWWTNKKMVGKESTSSNGPAFFPMLQSEIV 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03014 469 MobiDBLite consensus disorder prediction 398 421 - -
Vimu3g03014 469 MobiDBLite consensus disorder prediction 152 171 - -
Vimu3g03014 469 MobiDBLite consensus disorder prediction 398 436 - -
Vimu3g03014 469 MobiDBLite consensus disorder prediction 449 469 - -
Vimu3g03014 469 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 5 467 IPR040420 -
Vimu3g03014 469 MobiDBLite consensus disorder prediction 422 436 - -
Vimu3g03014 469 MobiDBLite consensus disorder prediction 266 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03014 Vimu-Chr3 44094700 44098040 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03014 - - ccaj:109793217 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02159 8 27950415 27954596 Vimu3g03014 3 44094700 44098040 ECH
Vimu3g03014 3 44094700 44098040 Vimu3g03014 3 44094700 44098040 ECH
Vimu8g02159 8 27950415 27954596 Vimu3g03014 3 44094700 44098040 PCT