Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01946 ATGTTAGCCTTTGTGTGGTGTTCTACTCTGCAGACTGTAGTTTATATATTTGAAATTCTGTTTTGTTTGGGGTTAAATCATTCCAATGATCTCAGAAAAGAAGACTGCAAGGAAACAGGTTCACTGGTTGTTTGCTTTGGGGAAATGTTAATAGACTTTGTTCCGACTGTGGGAGGAGTATCGCTGGCTGAAGCACCTGCTTTCAAGAAAGCTCCCGGTGGAGCTCCTGCCAATGTAGCTGTTGGTATCTCTAGATTGGGAGGTTCATCTGCTTTTATTGGCAAGGTTGGAGCAGATGAATTTGGGTATATGCTGGCAGACGTTTTAAAGCAAAACAATGTTGAGACTTCTGGCATGCGGTTTGACTCTACTGCAAGAACTGCATTAGCTTTTGTTACACTTAGAGCAGATGGTGAACGTGAATTCTTGTTTTTCCGCAATCCAAGTGCTGATATGCTCCTTCAAGAATCAGAACTTGATAAAAATCTCCTAAAGCAGGCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAGTCAGCTCACCTTGCTGCTATGAGAATTGCCAAAAACTCCGGTTGCATTCTCTCTTATGATCCAAATTTGAGATTGGCTCTATGGCCTTCAGCAGATGCTGCTCGGAAAAGCATAATGGATATATGGGATCAGGCTGATGTCACAAAGATAAGTGAGGATGAAATTACATTTTTGACTGGAGGTGATGATCCTTATGACGATAATGTTGTTTTGAAGAAACTTTTTCATCCAAATCTCAAGCTTTTAATCGTTACCGAAGGGTCACAAGGTTGCAGATATTACACCAAAGCATTTAAGGGTAGGATTGCAGGTGTTAAAGTCAAACCTGTAGACACAACTGGTGCTGGCGATGCATTCGTTAGTGGGATTTTATACAGTATAGCTTCTGATCAAACTATTTTTCAGGATGAGAAACGTCTTAGAAAGGCTTTATATTTTGCCAATATATGTGGTGCACTCACTGTTACTGGAAGAGGTGCAATTCCTGCACTTCCTACAAAGGAAGCTATCTTGCAATTCTTACTAGAAGCAGCTGTAATATAA 1092 0.4066 MLAFVWCSTLQTVVYIFEILFCLGLNHSNDLRKEDCKETGSLVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGADEFGYMLADVLKQNNVETSGMRFDSTARTALAFVTLRADGEREFLFFRNPSADMLLQESELDKNLLKQARIFHYGSISLIDEPCKSAHLAAMRIAKNSGCILSYDPNLRLALWPSADAARKSIMDIWDQADVTKISEDEITFLTGGDDPYDDNVVLKKLFHPNLKLLIVTEGSQGCRYYTKAFKGRIAGVKVKPVDTTGAGDAFVSGILYSIASDQTIFQDEKRLRKALYFANICGALTVTGRGAIPALPTKEAILQFLLEAAVI 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01946 363 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 73 97 IPR002173 GO:0016301
Vimu8g01946 363 PRINTS Ribokinase signature 68 87 IPR002139 GO:0016301
Vimu8g01946 363 PRINTS Ribokinase signature 223 238 IPR002139 GO:0016301
Vimu8g01946 363 PRINTS Ribokinase signature 265 276 IPR002139 GO:0016301
Vimu8g01946 363 Gene3D - 40 362 IPR029056 -
Vimu8g01946 363 SUPERFAMILY Ribokinase-like 43 357 IPR029056 -
Vimu8g01946 363 CDD bac_FRK 42 344 - -
Vimu8g01946 363 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 294 307 IPR002173 GO:0016301
Vimu8g01946 363 Pfam pfkB family carbohydrate kinase 42 349 IPR011611 -
Vimu8g01946 363 FunFam Probable fructokinase-2 40 361 - -
Vimu8g01946 363 PANTHER HEXOKINASE FAMILY MEMBER 42 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01946 Vimu-Chr8 25213079 25215794 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01946 K00847 - gmx:100778752 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01946 8 25213079 25215794 Vimu3g03122 3 44942929 44945462 ECH
Vimu8g01946 8 25213079 25215794 Vimu8g01946 8 25213079 25215794 ECH
Vimu8g01946 8 25213079 25215794 Vimu3g03122 3 44942929 44945462 PCT