Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03122 ATGCCTTGGCTCGTAGCCAATTCTTTGAAGGTTTGTTATTGGTTTATTTCCGAGCAATACTTGAATTCAAAAGGCTTACACTTTTGTTGTTATGGTTTTGGCTCCAAGGAAACAGAGAGCAGAAGTAAATCAAGCGATCTCACAAATGAAGACCGTAAGGGAAACGGTGGACCCGTTGTTTGCTTTGGTGAAATGTTAATAGATTTTGTGCCAACAGTGGGTGGAGTGTCACTAGCTGAAGCACCGGCATTCCAGAAAGCTGCTGGTGGTGCTCCTGCCAATGTGGCTGTTGGCATCGCTAGGCTTGGAGGTTCATCTGCTTTTATAGGCAAGGTTGGAGCAGATGAATTTGGGTATATGTTGGCTGATATTTTAAAGCGGAATAATGTTGACACATCTGGCATAAAGTTTGACCCTAATGCAAGAACTGCTTTAGCTTTTGTTACACTTAGAGCTGATGGCGAGCGTGAGTTTTTGTTTTTCCGAAATCCTAGTGCTGATATGCTTCTTCAAGAGTCAGAGCTTGCTACCGATCTCATAAAGAAGGCTAAAATATTCCATTATGGTTCCATCAGCTTGATTCACGAACCATGCAAGTCAGCTCATCTTGCTGCTATGAAAATTGCTAAAGACTCTGGTTGCATTCTCTCTTATGATCCAAATTTGAGATTGGCACTGTGGCCCTCTGCCGAGGCAGCTCGGAATGGCATAAAGAGTGTATGGGATCAAGCCGATGTCATAAAGATAAGTGAGGACGAGATAACATTTTTGACAGGTGGTGATGATCCTTATGATGATGATGTTGTATTAAAGAAGCTTTTTCACCGTAATCTTAAGCTTTTAATCGTTACCGAAGGGTCAGGAGGTTGTAGATATTACACCCAGGAATTTAAGGGCAGGGTTGCAGGTGTCAAAGTTAATGCTGTTGACACAACTGGTGCAGGGGATGCATTTGTTAGTGGGATTATCTATAACTTAGCTTCTGACCAAAGTATTTTCCAGAATGAGGAACGTCTCCGAAAAGCTCTGTATTTTGCGAATGTATGTGGTGCCATTACGGTAACACAGAGAGGGGCAATTCCTGCACTACCCACAAAAGAAGCTGTCCTACAATTCGCTGAAACATAA 1128 0.4255 MPWLVANSLKVCYWFISEQYLNSKGLHFCCYGFGSKETESRSKSSDLTNEDRKGNGGPVVCFGEMLIDFVPTVGGVSLAEAPAFQKAAGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKRNNVDTSGIKFDPNARTALAFVTLRADGEREFLFFRNPSADMLLQESELATDLIKKAKIFHYGSISLIHEPCKSAHLAAMKIAKDSGCILSYDPNLRLALWPSAEAARNGIKSVWDQADVIKISEDEITFLTGGDDPYDDDVVLKKLFHRNLKLLIVTEGSGGCRYYTQEFKGRVAGVKVNAVDTTGAGDAFVSGIIYNLASDQSIFQNEERLRKALYFANVCGAITVTQRGAIPALPTKEAVLQFAET 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03122 375 CDD bac_FRK 59 360 - -
Vimu3g03122 375 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 310 323 IPR002173 GO:0016301
Vimu3g03122 375 Gene3D - 57 375 IPR029056 -
Vimu3g03122 375 FunFam Probable fructokinase-2 56 375 - -
Vimu3g03122 375 Pfam pfkB family carbohydrate kinase 59 365 IPR011611 -
Vimu3g03122 375 PRINTS Ribokinase signature 281 292 IPR002139 GO:0016301
Vimu3g03122 375 PRINTS Ribokinase signature 84 103 IPR002139 GO:0016301
Vimu3g03122 375 PRINTS Ribokinase signature 239 254 IPR002139 GO:0016301
Vimu3g03122 375 PANTHER HEXOKINASE FAMILY MEMBER 59 373 - -
Vimu3g03122 375 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 89 113 IPR002173 GO:0016301
Vimu3g03122 375 SUPERFAMILY Ribokinase-like 59 372 IPR029056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03122 Vimu-Chr3 44942929 44945462 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03122 K00847 - gmx:100818404 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01946 8 25213079 25215794 Vimu3g03122 3 44942929 44945462 ECH
Vimu3g03122 3 44942929 44945462 Vimu3g03122 3 44942929 44945462 ECH
Vimu8g01946 8 25213079 25215794 Vimu3g03122 3 44942929 44945462 PCT