Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01916 ATGGCCCTCGAAACCTGGCTCATCAAGGTCAAAACGGCGCTGGCGCACAGCCTTACCAAGAAACCGTCGTTTTCCTCGTCGAAGCCAAAGCACGTCGCCGTTTTGTCCTTCGAGATCGCGAACGTGATGTCCAAGCTCCTCCACCTCTGGCAGTCCCTCTCCGACGCCAACGTCATTCGCCTCCGCAACGACGCCATCGCGCTCGAAGGCGTGCGCAAGCTCATCTCAAACGACGAGTCTTTTCTTCTAAGCCTCGCCGTGGCCGAGTTCGCCGACTCGCTCAGACTCGTTGCCAACTCGGTGTCCCGACTCAGCAACTACTGCCACGAACCTTCTCTCCGATCCTTCCACCGAATCTTCACCGAGTTCGCGAACTCAGGCCTCGACCCGCGCGCGTGGACCCTCACCACCCCGAAAGACATCGAAACCAAACACAGAAAATTGCAACATTACGTGACTCTCACGGCAACACTCCACAAAGAAATCGACGCTCTCACGCTCCTCGAAAGCGCGTTTAAAAAAGCGCTTCTCAACGCTGACAACGCCGCCACCGAACACTCCTCTCACAAAAAACTAAGCGATCTTCAGCAGAAGATTTTCTGGCAGAAGCAAGAGGTGAAGAACTTGAAGGAACGGTCGTTATGGAACAAAAACTTCGATGGGGTTGTTTTGTTGTTAGCAAGGTTTGTTTTCACCGTGTTAGCGCGGATTAAAGTTGTCTTCGGAATCGGCCATAGTAGTAGTGTTCCCTTTTTGTCACGTAGTTTGTCTTCCGTTTATCCCTCCGATCACCAAAACCCTATTTCTTCTTGCTCCTTTGTATCTGGGCCGTTGAAAAGCTCAAAACTTGACGACGAAAATGAAAATTTGGGAAATGGGTTTTTCGAGTCTAATTGCAAGGTGTTGAAGTTGAAGGGTGACGGTGACAGTGATACTTTGGGTGCTTCAGCTTTGGCCTTGCACTATGCAAACTTGGTGATGGTGTTGGAGAAGATGATAAAGTCACCCCAGTTGGTTGGGGTGGATGCTAGAGATGATTTGTATGGGATGTTACCAAGTAGCATAAGGTCATCTTTAAGGGCAAGATTGAGAGGGGTGGGGTTTTCTGCATGTGATGATCACGTGCTCGCCGGAGAATGGAGGGATGCATTGGGGAGGATTCTGGGGTGGCTGGCACCATTGGCACATAACATGATAAAGTGGCACAGCGAAAGAAGCTATGAGCAGCAGAACTTAGTACCAAAAACCAATGTGTTGTTGTTGCAGACTTTGTTCTTTGCAAACAAAGAGAAGACAGAAGCTGCCATCACTGAGCTGCTTGTGGGGTTGAACTATGTTTGGAGGTTTGAGAGGGAAATGACAGCTAAGGCATTGTTTGAATGTACCACATTTAATAATGGCTTCCACAAGCCCAGCTAA 1419 0.4947 MALETWLIKVKTALAHSLTKKPSFSSSKPKHVAVLSFEIANVMSKLLHLWQSLSDANVIRLRNDAIALEGVRKLISNDESFLLSLAVAEFADSLRLVANSVSRLSNYCHEPSLRSFHRIFTEFANSGLDPRAWTLTTPKDIETKHRKLQHYVTLTATLHKEIDALTLLESAFKKALLNADNAATEHSSHKKLSDLQQKIFWQKQEVKNLKERSLWNKNFDGVVLLLARFVFTVLARIKVVFGIGHSSSVPFLSRSLSSVYPSDHQNPISSCSFVSGPLKSSKLDDENENLGNGFFESNCKVLKLKGDGDSDTLGASALALHYANLVMVLEKMIKSPQLVGVDARDDLYGMLPSSIRSSLRARLRGVGFSACDDHVLAGEWRDALGRILGWLAPLAHNMIKWHSERSYEQQNLVPKTNVLLLQTLFFANKEKTEAAITELLVGLNYVWRFEREMTAKALFECTTFNNGFHKPS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01916 472 Pfam Protein of unknown function (DUF668) 312 400 IPR007700 GO:0045927
Vimu8g01916 472 Pfam Domain of unknown function (DUF3475) 34 89 IPR021864 GO:0045927
Vimu8g01916 472 Coils Coil 192 212 - -
Vimu8g01916 472 PANTHER BNAC09G50660D PROTEIN 21 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01916 Vimu-Chr8 24821870 24825518 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01916 - - gmx:100801628 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01916 8 24821870 24825518 Vimu8g01916 8 24821870 24825518 ECH
Vimu8g01916 8 24821870 24825518 Vimu3g02374 3 38217877 38220282 PCT