Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01912 ATGGCTAAACATCAAAAGGGTCTTCTTTTACAATCCAATACAACATGTGAATCTCTTCTTAACGAACTTCAGATAATATGGAATGAAGTCGGGGAGTCTGAGACTGAAAAAGATAGAATGTTGTATGAGCTTGAAGAAGAGTGTGTAGAAGTATATAGAAGAAAGGTAGATAAAGCAAATCGGTCTAGAGCTCAACTAAGGCAGGAGATTGCTGATTCCGAGGCAGAGCTTGCATGTATCTGCTCAACAATGGGAGAGCGACCAGTGCATTTTAGACAGTTTGACAAAAAAGCTGGAAGCTTGAAGGAAGAGCTGGCAAGAGTTCACCCAGAGCTGGAGGAAATGCGGAAAAGGAAGTTTGAGCGTAGAAATCAATTTATAGAAGTTCAAGAACAGCTTCAAAGTATCTCAAATGAGATTTGTAGTACAGGAGAATATATTACAGCTGTTGTAGATGAAACTGATTTGTCATTGAGAAAGCTTGAAGAATTACACAGAGAGCTCCTTGCACTTCAGAAAGAGAAGAGTGAACGCCTCAAGAAGGTTCAAGACCAAATATGTACCTTGAATTCTCTATGTTCAGTGCTTGGTTTAGACTTCAAGCAGACAGTCAGTGGAGTCCATCCTAGCTTAGGAATTTCAGAAGGTCCTAGGAGTGTCAATAGTGAAACCATAAATCAATTGGCTATTGCCATACAAGAACTGCGAAAAGTTAAACTACAGAGAATGCAAAGGCTTCAAGATCTAGCTTCAACAATGTTGGAGCTCTGGAATTTGATGGATACGCCTGTTGAAGAGCAACAGATGTTTCAGAATGTTACTTGTAATATCGCTGCTTCAGAAGATGAAGTAACCGAACCAAACAGCTTGTCTGAGAACTTCATCAACTATGTCGAGGCAGAAGTATCCAGGTTGGAAGAGTTAAAATCAAGCAAAATGAAAGAGCTTGTTTTGAGGAAAAGAGCAGAGCTAGAGGAGATTTGTCATAAGACTCATTTGATTCCAAAAATTGACAGTGCAGTGGAACACGCTGTTGAAGCGATAGAATCTGGAGCGGTAGACCCAGCTTGTGTGCTTGAACAGCTTGAACTTCAGATTGCCTCTGCAAAAGAGGAAGCTTTTGTCAGAAAAGAAATACTTGAAAAAGTTGAGAAATGGTTAGCAGCACGTGAAGAAGAATCTTGGCTTGAGGAGTACAACATGGATGAAAATCGATACAATGCTGGGAAAGGTTCTCATCTTACTCTCAAGCGAGCGGAGAAAGCCCGTGCCTTGGTCAGCAAACTACCAGCAATGGTAGAGGCTTTAACTTCAAAGACTATAGCATGGGAAAAAGACAAAGGCATTGAGTTCACATATGATGGTACCTGTCTGATCTCTATGCTTGAGAATTACTCGCTATCACGGCAAGAGAAGGAGCAAGAACGTCGTAGGCAGCGGGTATATGGACCACTTGAACTGAAGAAACTTCAGGGACAAATAACAGCGGAAAAGGAAGTACTCTATGGGTCAAAGGTAAGCCCTTCAAAGGCCCAGAGTGCAAAAAAGACACCTAGATCTGGAAGCGCAGCATGTAGAAAAATCTCCCTTGGATGTCAGACACCAAAATCTGATTCGAAACATTATCAGTCACAGTCATCCTTCATAAAGAGGACAGACAAAGCCCACCAAAATGATCAACTAAATAATCTGGATGATGATAAGAAGATTCTCCATCGGATTCCCCGAAGTACTCTTGATGATGATGGCTTTTTGGTAAAGGCTGTGGAGGCCAAAGCCACATCTCAGCTGGTTGATTTTCCCATAATTTCTAGCTGGTATATCGAGCATTCCTTTGCTGTTTGTGTTTCATATAATCTGCAGAAAAAGCATATGTATATACTTAACGATTTTCTGTATGACATTCATGCATTTAGAACTCACCACTCATTTTGTTGTTCTTATGTTATAGCTAGAAGAGGACTTGATACTGCTGGTGTTCCTATGAAAAAATTCCCTACTGGTGCTGTAAGTTTTCGTGAATTGGAATCTCCTTCTACACGCCAACCTTTTTCTCCCATCTCTTTAATGGTATCATCGAAAGCTAATGATGCAAATGCTGTAGACGATATACAGAACAAGAAGTTGCAGAAAACATTAGTAGTTAGCAATTTTCCACCCATCACTGCTACATCAAAGACAACCACAGTGGTGGATGAAGAAAATAGAACTCCTATGAATACGTCCATGACTCCAACCTCTGCCTCAGTTCCTTATAGAGAAGGCTCAGTTGCTTTTACCGCTCTCTGCAATGGTGGAGATTTGAGCCACAGTATCGCGTTTTTCTCGGTGTTCAACCTCAACCGTTCGAAATTATGCTTCTGGGGTGTTAAGGTTGTCGAGCCCCCCCAGAGCTTCCACGTGGCACTAAGCTCCGTGCAGTTTTCTGGGCCCACGGGGGATTCGCCGGCACCGGTGAGTGCTCCGGTGATTACTTCCGGTAGTACAGAGGGGAAGAAGAAGAGGGGCCGGCCTAGGAAATATGGACCGGACGGCAATGTGGCGCTGTCGCCGATGCCGATATCATCGTCGATTCCATTGACCGGAGACTTCTCAGTCTGGAAAAGGGGCAGAGGAAAGCCAGTTGAATCAATGAAGAAGTCTTTTAAGTTTTATGAAGTTGAAGGTCAAGGTGCAGGACAAGGTGATCAAATTGCATACTCAATTGGTGCCAATTTCACACCTCACATCCTTGTAGTAAATGCTGGCGAGGATGTTACTATGAAGATTATGTCCTTCTCTCAACAAGGATGTCAAGCGATTTGCATTCTGTCTGCAAATGGCACAATTTCAAATGTTACACTACGCCAACCAACCTCTTCTGGTGGTACTTTAACATATGAGGGGCGCTTTGAAATTCTTTCCTTGACTGGTTCATATATGCCAACTGAGAATGGGTTTACAAAGAGCAGATCTGGTGGAATGAGCATCTCGTTGGCCGGTCCAGATGGTCGAGTAATGGGGGGTGGACTGGCTGGTTTGCTGGTAGCTGCTGGTCCCGTGCAGGTTGTTGTAGCTAGTTTTGTTCCTGGTCACCGGTTGGAGCAGAAACCAAAGAAGCCAAGGGTGGAGCATGTTCCAATGACTGCACCTATACATGCCAGCCCTATACATGTGAGCCCTACTTCTGCAGAAGATATAACAATTGGTCTTGGTGGAGTAAAGCCAATCTTGACACCAGCTGCTTTTCAAATGGACAGTATCTTTGGCAATGGACAACCTTCTGATGATGAGGCTCCTTTCCCTGAAGAAGAAGAAGAAGAAGAAGAAGAGCCTTATGCAGATGCTGAAGTTGCTAGCTAA 3342 0.4318 MAKHQKGLLLQSNTTCESLLNELQIIWNEVGESETEKDRMLYELEEECVEVYRRKVDKANRSRAQLRQEIADSEAELACICSTMGERPVHFRQFDKKAGSLKEELARVHPELEEMRKRKFERRNQFIEVQEQLQSISNEICSTGEYITAVVDETDLSLRKLEELHRELLALQKEKSERLKKVQDQICTLNSLCSVLGLDFKQTVSGVHPSLGISEGPRSVNSETINQLAIAIQELRKVKLQRMQRLQDLASTMLELWNLMDTPVEEQQMFQNVTCNIAASEDEVTEPNSLSENFINYVEAEVSRLEELKSSKMKELVLRKRAELEEICHKTHLIPKIDSAVEHAVEAIESGAVDPACVLEQLELQIASAKEEAFVRKEILEKVEKWLAAREEESWLEEYNMDENRYNAGKGSHLTLKRAEKARALVSKLPAMVEALTSKTIAWEKDKGIEFTYDGTCLISMLENYSLSRQEKEQERRRQRVYGPLELKKLQGQITAEKEVLYGSKVSPSKAQSAKKTPRSGSAACRKISLGCQTPKSDSKHYQSQSSFIKRTDKAHQNDQLNNLDDDKKILHRIPRSTLDDDGFLVKAVEAKATSQLVDFPIISSWYIEHSFAVCVSYNLQKKHMYILNDFLYDIHAFRTHHSFCCSYVIARRGLDTAGVPMKKFPTGAVSFRELESPSTRQPFSPISLMVSSKANDANAVDDIQNKKLQKTLVVSNFPPITATSKTTTVVDEENRTPMNTSMTPTSASVPYREGSVAFTALCNGGDLSHSIAFFSVFNLNRSKLCFWGVKVVEPPQSFHVALSSVQFSGPTGDSPAPVSAPVITSGSTEGKKKRGRPRKYGPDGNVALSPMPISSSIPLTGDFSVWKRGRGKPVESMKKSFKFYEVEGQGAGQGDQIAYSIGANFTPHILVVNAGEDVTMKIMSFSQQGCQAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLTGSYMPTENGFTKSRSGGMSISLAGPDGRVMGGGLAGLLVAAGPVQVVVASFVPGHRLEQKPKKPRVEHVPMTAPIHASPIHVSPTSAEDITIGLGGVKPILTPAAFQMDSIFGNGQPSDDEAPFPEEEEEEEEEPYADAEVAS 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01912 1113 Pfam Plants and Prokaryotes Conserved (PCC) domain 908 1022 IPR005175 -
Vimu8g01912 1113 Gene3D - 366 504 - -
Vimu8g01912 1113 SUPERFAMILY AF0104/ALDC/Ptd012-like 905 1023 - -
Vimu8g01912 1113 MobiDBLite consensus disorder prediction 811 846 - -
Vimu8g01912 1113 FunFam AT-hook motif nuclear-localized protein 1-like 908 1038 - -
Vimu8g01912 1113 Pfam Microtubule associated protein (MAP65/ASE1 family) 17 519 - -
Vimu8g01912 1113 Gene3D - 908 1038 - -
Vimu8g01912 1113 MobiDBLite consensus disorder prediction 811 827 - -
Vimu8g01912 1113 CDD DUF296 907 1021 IPR005175 -
Vimu8g01912 1113 ProSiteProfiles PPC domain profile profile. 903 1045 IPR005175 -
Vimu8g01912 1113 Coils Coil 49 76 - -
Vimu8g01912 1113 MobiDBLite consensus disorder prediction 1091 1113 - -
Vimu8g01912 1113 Coils Coil 158 181 - -
Vimu8g01912 1113 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 11 544 IPR007145 GO:0000226|GO:0008017
Vimu8g01912 1113 MobiDBLite consensus disorder prediction 1079 1113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01912 Vimu-Chr8 24747532 24759172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01912 11 548 EF-hand Containing Proteins AT5G62250 54.281 4.82e-171 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01912 K16732 - gmx:100777734 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01912 8 24747532 24759172 Vimu3g02372 3 38182407 38186502 ECH
Vimu8g01912 8 24747532 24759172 Vimu8g01912 8 24747532 24759172 ECH
Vimu8g01912 8 24747532 24759172 Vimu3g02372 3 38182407 38186502 PCT