Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02372 ATACAAGTGCACAAAATGTCTAAACCTCAAAATGATCCCCTTCTACAATCGGAAACAACTTGTGGAACACTTCTCTATGAGCTTCAGATAATATGGGACGAAGTTGGGGAGTCTGAAACTGACAGAGATAGAATGTTGTTTGAGCTTGAACAAGAGTGCCTAGAAGTATACAGAAGGAAGGTAGATCTGGCAAATCGATCTAGGGCTCAATTAAGGCAGGCAATCGCTGATTGTGAGGCAGAACTTGCCGCTATTTGTTCATCAATGGGAGAGAGACCAGTGCATATTCGTCAGACTGATCAAAATGTTGGTAGCCTCAAGGAAGAGCATGCAAGAATTCTTCCGCAGTTGGAGGAGATGCAAAAAAGGAAATCTGAGCGTAGAAATCAATTCATAGAAGTCCAAGAGCAGATTCAGAGCATTTCAATTGAAATACATGGTCCTAGAGAGTATATTCCCGCTGTCATAGATGAAACTGATTTGTCCGTGAGAAAACTTGAAGAATTGCATAGGCAGTTACATGCACTTCAGATTGAGAAGAGTAGTCGCTTAAAGCAAGTCCAGGAGTACCTGTATACATTAAATTCTCTATGTTCAGTGCTTGGTTTGGACTTCAAGCAGACAATTAATGGAATTCATCCTAGTTTATTGGAATCAGAAGGATCTAAGAGTGTAAGTAATGACACCATTCAACAATTAGCGGTTGCTATAGAAGAACTGCGGGGGGTTAAATTGCAGAGAATGCAGAAGCTCCAAGATCTTGCTACTACAATGTTGGAGCTCTGGAACTTAATGGATACCCCTGTTGAAGAGCAACAGATGTTTCAGAATGTTACATGTAATATAGCCGCTTCAGAACATGAAGTAACTGAACCAAACACCTTGTCTGTGGAGTTCATCGATTTGGTTGAGGCGGAAGTAGCTAGGTTAGAAAAGTTGAAATCAAGCAAGATGAAAGAGCTTGTATTAAAGAAGAGAACAGAGCTGGAGGAGATTTGTCGAAAGACTCATTTGATTCCAGAAATAGACAATGCAGTGGAATATGCTGTTGAAGCCATAGAATCTGGTTCTGTGGACCCTGCTTGTGTGCTTGAACAAATTGAACTTCAGGTTGCCCAAGTCAAAGAAGAAGCTTTTAGCAGAAAAGAGATACTTGAAAGGGTCGAGAAATGGTTGGCAGCATGCGATGAAGAGTCTTGGCTTGAGGAGTACAACAGGGATGATAATCGATACAATGCTGGGAGAGGTGCTCATCTTACTCTCAAGCGAGCTGAGAAAGCTCGTGCCTTGGTCAACAAAATTCCAGCAATGGTGGATGGTCTGACTTCCAGAACAATTGCATGGGAGAAGGAAAAAGGCATTGAATTCACATATGATGGTATCCGTCTACTTTCTATGCTTGAAGAATACACTATATTACGCCAAGAGAAAGAACAAGAACGCCGTAGGCAGCGGGATTTGAAGAAACTACAGGGACAGATGATAGCGGAACAGGAGGCACTATATGGGTCAAAACCAAGCCCTTCCAAGCCCCAGAGTGTAAAAAAGGGGTCTAGGATGTCAACAGGAGGAGCAACTAGTAGGAGAGTCTCGCTTGGGGGAGCAATGCTTCAAACTCCAAAGCCTGATTCAAAAGCTACTCGTGCCATGAGAAAGACTGACAAAGGGCACCAAATTGAGCATTTAAATTACCTGGATGATGGCATTTCAGGTTTATCAGCAGCTAGAAGAGGGCTGGATATTGCTGGCGTTCCTGTTAAAAAGCACTCATTTGGTGCTGGGACTCAAATCATAGAATCTCCTCTGACACGACAACCTTTTTCTCCTATCTCTTCTAACAATGTAGCTTCAAAAGCTAATGTGGTAAATGCTACAGATGAACATAAACCGGGTGATAAGTTGCAGAGAACACTGTCGCTTAACAATGTACCATTCACCACTCCCTCCAAGACAGCTACTACTTTGGTAGATGAAGAGAATAGAACTCCAAAGACAATGCCTATTCCTTTCCCAGCTACCCCATCCACAGTATCAATTCCAATGAGTATGGCTATGACTCCAGTTCCTTCATCAATTATAAAGAATATAAACTTGAATTCAACTCTCACAAGCACAGCAGTTCCTTATGGAAATGACTTGGTTCAAGAGATTGATTATTCCTTTGAGGAAAAAAGGCTCGCTTATATGATGTTAGCATGA 2199 0.4193 IQVHKMSKPQNDPLLQSETTCGTLLYELQIIWDEVGESETDRDRMLFELEQECLEVYRRKVDLANRSRAQLRQAIADCEAELAAICSSMGERPVHIRQTDQNVGSLKEEHARILPQLEEMQKRKSERRNQFIEVQEQIQSISIEIHGPREYIPAVIDETDLSVRKLEELHRQLHALQIEKSSRLKQVQEYLYTLNSLCSVLGLDFKQTINGIHPSLLESEGSKSVSNDTIQQLAVAIEELRGVKLQRMQKLQDLATTMLELWNLMDTPVEEQQMFQNVTCNIAASEHEVTEPNTLSVEFIDLVEAEVARLEKLKSSKMKELVLKKRTELEEICRKTHLIPEIDNAVEYAVEAIESGSVDPACVLEQIELQVAQVKEEAFSRKEILERVEKWLAACDEESWLEEYNRDDNRYNAGRGAHLTLKRAEKARALVNKIPAMVDGLTSRTIAWEKEKGIEFTYDGIRLLSMLEEYTILRQEKEQERRRQRDLKKLQGQMIAEQEALYGSKPSPSKPQSVKKGSRMSTGGATSRRVSLGGAMLQTPKPDSKATRAMRKTDKGHQIEHLNYLDDGISGLSAARRGLDIAGVPVKKHSFGAGTQIIESPLTRQPFSPISSNNVASKANVVNATDEHKPGDKLQRTLSLNNVPFTTPSKTATTLVDEENRTPKTMPIPFPATPSTVSIPMSMAMTPVPSSIIKNINLNSTLTSTAVPYGNDLVQEIDYSFEEKRLAYMMLA 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02372 732 Pfam Microtubule associated protein (MAP65/ASE1 family) 23 512 - -
Vimu3g02372 732 Coils Coil 117 137 - -
Vimu3g02372 732 Coils Coil 54 81 - -
Vimu3g02372 732 Coils Coil 300 320 - -
Vimu3g02372 732 MobiDBLite consensus disorder prediction 505 528 - -
Vimu3g02372 732 MobiDBLite consensus disorder prediction 497 547 - -
Vimu3g02372 732 FunFam 65-kDa microtubule-associated protein 6 371 504 - -
Vimu3g02372 732 Coils Coil 463 493 - -
Vimu3g02372 732 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 16 553 IPR007145 GO:0000226|GO:0008017
Vimu3g02372 732 Gene3D - 370 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02372 Vimu-Chr3 38182407 38186502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02372 16 544 EF-hand Containing Proteins AT5G62250 57.143 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02372 K16732 - gmx:100777734 1246.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01912 8 24747532 24759172 Vimu3g02372 3 38182407 38186502 ECH
Vimu3g02372 3 38182407 38186502 Vimu3g02372 3 38182407 38186502 ECH
Vimu8g01912 8 24747532 24759172 Vimu3g02372 3 38182407 38186502 PCT