Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01892 ATGATATCCGGCCACCGGCGGTGGGAGGCTCAGGTGGGGGTCCAGGAGCGGTATAAGTGGGACCGCGGCGGGTCGGACGACAACCCGACCCGGAAGATCCGGGCTGAGGCTAATTGTCCACGTTGTACTAAGGACATGAACCTTGTTTTCTCTAATCGCCATTTTCCCACCCCACAAAGTGAGTCTAATTCTGAATTGGATGGCGAGGGAGAGAGAGAAAAGGGTTACCAAGCGGTTAACCTTTGCCCGAGTTGCAAAACTGCTTATTACTTTCGCCCTTATGACACTACACCTTTGCAAGGTACTTTCGTGGAGATTGGTAGGGTCAGTAGCACTAACAATAATGGTCTTAATAATGTAAGTGGTAAGGGTCATTCTCCTAGGAGGATCACACATGGGAAAGGTGGTGGCAAAGAAGGTAGTAGTAGTACTAGTAGGGGTATTCATGGAGGAGAGGAGTCTGGCCCTAAGAGTAATAATAACGCAAGTAAATGGCTTGAAGTGTCATTGTGGGAGACTTTGATGTCATACAATGGTGGTGGTGGTGGTAATGGTAATAATGGGGAGCCACCTGAGTCGTGGCCTGGTGTTAATGGGAATGAGAATGGGTTGGCTGTGCATACTCCTCCAGGGCCGCCTTTTGCACCTGGGATTAATGTTATCCGGGCTACGGGGCCGCGGAATGGTGGTTCAGGTGGTGGTGGAGGCAATGGTGAGAAGACTGCCTGGGGAGGGTCTAATTTGGGGAAGGATTTACCCTCACCGAAGGAGATATGTAAGGGTCTTGACAAGTTTGTTATTGGCCAAGAGAGAGCAAAGAAGGTGCTTTCTGTAGCTGTTTATAACCACTATAAAAGAATATACCATGCCACTTTACAGAAAGGGTTAGTTCTTTTACTACCCCTTGGTGGAACTGCAGCCAGTTCTTTTGATTCCTTATTTCCCCGTTTTTATACAGATCGCTTCATGTATAAACCAATCTTGGAGTTCAATACTAGGTCAACTGTAGATTCAGAAGTATTAGATGATGACGATAATGTGGATCTAGAAAAGAGTAATGTTCTCTTGATGGGTCCAACAGGTTCAGGGAAGACATTACTTGCCAAAACACTGGCTCGATTTGTGAATGTGCCATTTGTCATTGCTGATGCAACAACCTTAACACAGGCAATAACTATATCTGATTTGGTTGTGTTTGGCTCATTTCTCCTTCGACAAAACCTAAAAGAGCATTTTAATTTGCAGGCTGGTTATGTTGGAGAAGATGTTGAATCAATATTGTACAAACTACTAGCGGCAGCAGATTTCAATGTTGCAGCAGCTCAACAAGGAATAATTTACATTGATGAAGTTGACAAAATAACTAAGAAGGCTGAGAGCTTAAATATCAGCAGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTATAGTAAATGTTCCTGAGAAAGGAGCCAGGAAGCATCCAAGGGGGGATAACATTCAGATGGACACAAAAAATATTCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAAAAAACCATTTCAGAAAGACGACAAGATTCTTCAATTGGTTTTGGAGCACCAGTTCGTGCCAATATGAGAACTGGTGGAATAACAGATTCTGTAGTAACATCATCTTTACTTGAGTCCGTGGAAAGTGCCGATCTTATTGCATTTGGCCTCATACCAGAGTTTATTGGACGATTCCCCATCTTAGTCAGCTTGTCAGCTTTAACTGAAGACCAACTTATGATGGTCCTCACTGAACCAAAAAATGCTCTTGGCAAGCAGTACAAGAAATTATTTAGCATGAATAATGTCAAGTTACACTTTACAGAGAAAGCTCTAAGGCTGATAGCAAAGAAAGCAATGTCCAAAAATACTGGTGCTAGAGGTTTAAGATCCCTACTGGAAAGCATTTTAACTGAGGCGATGTTTGAGATTCCTGATATTAAGACAGGAAGTGATCGAGTTGATGCAGTTGTTGTTGATGAAGAGTCGGTAGGATCACTAACTTCCCTCGGATGTGGGGGGAAAATTCTTCGGGGAGATGGTGCTTTGGAGCAGTACCTAGCTAAGATGAAAGATTCAGCGGTTAATGTTGACGTGGGCGAATCAGACTTAAATGAGGGGGATTTGGAGCTTTCATCAAGAGCCATGAGCTTGTAA 2196 0.4358 MISGHRRWEAQVGVQERYKWDRGGSDDNPTRKIRAEANCPRCTKDMNLVFSNRHFPTPQSESNSELDGEGEREKGYQAVNLCPSCKTAYYFRPYDTTPLQGTFVEIGRVSSTNNNGLNNVSGKGHSPRRITHGKGGGKEGSSSTSRGIHGGEESGPKSNNNASKWLEVSLWETLMSYNGGGGGNGNNGEPPESWPGVNGNENGLAVHTPPGPPFAPGINVIRATGPRNGGSGGGGGNGEKTAWGGSNLGKDLPSPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIYHATLQKGLVLLLPLGGTAASSFDSLFPRFYTDRFMYKPILEFNTRSTVDSEVLDDDDNVDLEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAITISDLVVFGSFLLRQNLKEHFNLQAGYVGEDVESILYKLLAAADFNVAAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQMDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGITDSVVTSSLLESVESADLIAFGLIPEFIGRFPILVSLSALTEDQLMMVLTEPKNALGKQYKKLFSMNNVKLHFTEKALRLIAKKAMSKNTGARGLRSLLESILTEAMFEIPDIKTGSDRVDAVVVDEESVGSLTSLGCGGKILRGDGALEQYLAKMKDSAVNVDVGESDLNEGDLELSSRAMSL 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01892 731 Gene3D - 246 585 IPR027417 -
Vimu8g01892 731 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 586 688 - -
Vimu8g01892 731 Pfam C-terminal, D2-small domain, of ClpB protein 587 656 IPR019489 -
Vimu8g01892 731 CDD RecA-like_ClpX 253 584 - -
Vimu8g01892 731 Gene3D - 586 684 - -
Vimu8g01892 731 SMART ClpB_D2_small_2 587 677 IPR019489 -
Vimu8g01892 731 MobiDBLite consensus disorder prediction 52 72 - -
Vimu8g01892 731 MobiDBLite consensus disorder prediction 179 249 - -
Vimu8g01892 731 MobiDBLite consensus disorder prediction 111 125 - -
Vimu8g01892 731 Pfam AAA domain (Cdc48 subfamily) 350 580 IPR003959 GO:0005524|GO:0016887
Vimu8g01892 731 MobiDBLite consensus disorder prediction 111 162 - -
Vimu8g01892 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 672 IPR027417 -
Vimu8g01892 731 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 34 704 - -
Vimu8g01892 731 MobiDBLite consensus disorder prediction 137 162 - -
Vimu8g01892 731 SMART AAA_5 350 584 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01892 Vimu-Chr8 24559659 24567984 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01892 K03544 - gmx:100805340 1101.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01892 8 24559659 24567984 Vimu8g01892 8 24559659 24567984 ECH
Vimu8g01892 8 24559659 24567984 Vimu3g02361 3 38068588 38074488 PCT