Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02361 ATGTCTCGAATATTCTCTGCATGGAGCAAGAAGAAACTGCATCTCAGTTTCTTCAACAGTTTTTTCTCTTCTAGGCACAGCACCAGTACTGGGCCTTTACGGCCCAGGATTCTCAGACTGTACAGCAGCAGCAATGGGGAGCCACCGCAGGATTGGCATCACGACGCTGCCGTGCCTTCGCAAACTCCTTTCAGTGTTAATTTTGTTCGGGCCGCCGCTGGGCCCCGCCAAGAGAACACTGGGTGGGTCGGAGGCTCCAATTTGGGTAGGGATTTTCCGACTCCCAAGGAAATCTGCAAGGGACTCGATAAATTTGTTATTGGGCAACACAGGGCCAAGAAGGTGCTCTCTGTAGCGGTTTATAATCACTACAAGAGAATATTTAACGGGTCAGGGGAAGATGTGGGAATCTCCGAAGGATTGGATGATGACGATAATGTGGAGCTGGAAAAGAGTAATGTTCTCTTGATGGGTCCAACTGGTTCCGGGAAGACGTTACTTGCGAAAACATTGGCTCGTTTTGTGAATGTTCCCTTTGTCATTGCTGATGCAACTACACTAACGCAGGCAAGTATTGAGGCTGGTTATGTTGGAGAAGACGTTGAGTCAATATTGTATAAACTACTTGCGGTAGCATTCACAAGCATATATCACCCTCTTTCCGCTTTTGTTGAAAAGCTTTACCTTGCTCCCCATATTTTTTTCTGGGCTGGTTTGTGTGCCAATGTTCCCAAGGCAGCAGAGTTCAATGTTCAAGCAGCTCAACAAGGGATTGTTTACATTGATGAAGTGGACAAGATAACTAAGAAGGCTGAAAGCTTGAATATTAGCCGAGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTATAGTAAACGTCCCTGAGAAAGGAGCAAGGAAGCATCCACGGGGTGATAACATACAGATTGACACAAAGAACATTCTCTTCATATGTGGCGGAGCATTTATTGATCTTGAAAAAACCATTTCAGAGAGACGGCAAGATTCTTCAATTGGTTTTGGGGCACCAATCCGTGCCAATATGAGAGCTAGTGGGGTTACACATGCTGCAGTAACATCATCTTTACTTGAGTCGGTGGAAAGTTCTGATCTTATTGCATATGGTCTCATCCCAGAGTTTATAGGACGGTTTCCGATCTTAGTCAGCTTATCAGCTCTAACTGAAGACCAACTCATGCAGGTCCTCACAGAACCAAAAAATGCTCTTGCTAAGCAGTACAAGAAATTATTTGACATGAATGACGTAAAGCTACACTTCACAGAGAAAGCTCTTAGATTGATTTCAAAGAAAGCAATGGCCAAAAATACTGGTGCCAGGGGTTTAAGAGCCCTACTGGAAATCATTTTAACGGAAGCTATGTTTGAGATTCCAGATGTTAAAGCAGGAAATGAAATTATTGATGCGGTTGTTGTTGATGAGGAGTCGGTAGGATCGGTAAATTTCCTTGGCTGTGGAGGAAAAATTCTTTGTGGAGAGGGTGCTTTAGATCGGTACCTAGCTAAGATGGAGAGTTCAGTGGTTAATCATGACGTAGCGGAACCAGACTTACAAGAGGGGGAATCAGAGATTTCATCAAGAGCTATGGGCATGTAA 1635 0.4428 MSRIFSAWSKKKLHLSFFNSFFSSRHSTSTGPLRPRILRLYSSSNGEPPQDWHHDAAVPSQTPFSVNFVRAAAGPRQENTGWVGGSNLGRDFPTPKEICKGLDKFVIGQHRAKKVLSVAVYNHYKRIFNGSGEDVGISEGLDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQASIEAGYVGEDVESILYKLLAVAFTSIYHPLSAFVEKLYLAPHIFFWAGLCANVPKAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPIRANMRASGVTHAAVTSSLLESVESSDLIAYGLIPEFIGRFPILVSLSALTEDQLMQVLTEPKNALAKQYKKLFDMNDVKLHFTEKALRLISKKAMAKNTGARGLRALLEIILTEAMFEIPDVKAGNEIIDAVVVDEESVGSVNFLGCGGKILCGEGALDRYLAKMESSVVNHDVAEPDLQEGESEISSRAMGM 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02361 544 CDD RecA-like_ClpX 93 397 - -
Vimu3g02361 544 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 399 498 - -
Vimu3g02361 544 Pfam AAA domain (Cdc48 subfamily) 150 209 IPR003959 GO:0005524|GO:0016887
Vimu3g02361 544 Pfam AAA domain (Cdc48 subfamily) 245 393 IPR003959 GO:0005524|GO:0016887
Vimu3g02361 544 SMART ClpB_D2_small_2 400 493 IPR019489 -
Vimu3g02361 544 Gene3D - 87 398 IPR027417 -
Vimu3g02361 544 Pfam C-terminal, D2-small domain, of ClpB protein 400 470 IPR019489 -
Vimu3g02361 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 486 IPR027417 -
Vimu3g02361 544 SMART AAA_5 150 385 IPR003593 GO:0016887
Vimu3g02361 544 Gene3D - 399 495 - -
Vimu3g02361 544 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 57 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02361 Vimu-Chr3 38068588 38074488 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02361 K03544 - gmx:100818418 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01892 8 24559659 24567984 Vimu3g02361 3 38068588 38074488 PCT