Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01526 ATGACCTTGAAGAAAAGGGTCCTTTCAATTAACATTGAAGAGGCTGCTGTGGACTTTTTCAATCATCTCTTGCAGGAGAAGCCCAGAATTCCAGTTTTCATTCCTCTGATTCTGATTGCTTGGGCTGTTGAGAGATGGCTCTTTTCTGCTTCCTCTTGGGTTCCTCTTGCTCTTGCTGTGTGGACTACTATACAGTATGGGAAATACCAACGCAAACTACTCGTGGAGGACTTGGATAAGAAATGGAAGAGGATCATATTGAATGTCTCGCCCATCACACCATTGGAGCATTGTGAGTGGTTGAATAAGCTGTTGACAGAAGTCTGGTCCAACTATTTTAATGCCAAGTTTTCAATAAGGCTATCTGCTATTGTTGAGAAACGTATAAAGCTCCGGAAACCAAGACTTCTTGAAAGAGTTGAGCTACAGGAATTTTCACTAGGATCATGCCCTCCTAGCTTGGCTCTGAGAGGGATGCGTTGGTCAACTATTGGTGATCAGCGATTTCTGCAACTGGGTTTTGATTGGGATACAAGTGAAATGAGCATTTTGTTGCTTGCTAAGCTTGCAAAGCCGTTGATTGGAACTGCTCGAATTGTGATTAACAGTCTTCATATCAAGGGTGATCTTCTTGCTACGCCAATTCTAGATGGGAAAGCACTTCTGTACTCATTTGTATCAACTCCTGAGGTGAGAATAGGAGTTGCCTTTGGAAGTGGTGGGAGCCAATCACTTCCTGCCACTGAATGGCCTGTTGTTTCTTCTTGGCTGGAAAAACTTTTTGCTGACACCTTGGTAAAAACCATGGTGGAACCTCGGCGACGTTGTTTCACTTTGCCTGCAGTTGATTTAAGGAAAAAAGCAGTTGGAGGCATTGTATATATTAGAGTGATTTCAGCGAATAAACTTTCTGGGAGTTGCTTTAAGACATCTAGGAGGCAATCAAATGGGGCAACCAATGGTTATTCAGAGGAGAATTTTGATGACAAAGATCTGGAGACATTTGTAGAAGTAGAAGTTGAGGAATTAACCAGGAGAACAGATGTCAGACTTGGTTCAACCCCTAGATGGGATGCACCATTTAATATGGTTTTACATGATAATACAGGAACTCTTCGTTTCAATCTTTATCAGAGCCATCCCAACAATGTGAGGTGTGACTATCTAGCAAGTTGTGAAATCAAGTTGAGGCATGTTGAAGATGATTCAACAATAATGTGGGCCGTAGGACCTGATTCTGGAGTCATAGCAAAGCAGGCACAGTTCTGTGGAGAAGAAATTGAAATGTTGAAGGTGAGCATTGTAGTCAAAGAGTGGCAATTTTCCGATGGTTCGCATAGCTTGAACAGTATCCGGAGTAGCAACTCTCAGCAGTCAATTAATGGATCACCAAATTTTCAGTTAAAAACTGGAAGGAAAATTAGTGTAACTGTTGCGGAAGGAAAGGATCTTGCCGCAAAAGACAAAAATGGAAAATTTGACCCTTATATCAAATTGCAGTATGGAAAGGTTGTCCAGAAATCAAGAACTGGTCATACTCCAAATCCTGTCTGGAATCAGACATTTGAATTTGATGAGATTGGTGGTGGTGAATACTTAAAAATAAAAGGCTTCTCTGAAGAAATTTTTGGAGATGAAAACATTGGTAGTGCTCATGTGAATTTGGAAGGACTGGTTGATGGGTCAGTGAGGGATGTATGGATCCCTCTTGAAAGAGTGCGTTCTGGAGAATTAAGACTTCAAATATCAGTTAGAGTGGATGACCAAGAAGGATCCAAGGGTTCGGGTTTTGGCTCAGGCAATGGTTGGATTGAACTTGTTCTGATAGAGGGAAGGGATCTTGTTGCAGCCGATCTCAGAGGGACAAGTGATCCATATGTGAGGGTACACTACGGAAGCTTTAAGAAAAGGACAAAGGTCATATACAAAACTCTTAATCCTCAATGGAACCAGACCTTAGAGTTCCCTGATGATGGAAGTCCCCTAATGCTTTATGTCAAAGATCATAATGCATTATTGCCCACATCAAGTATAGGTGAATGTGTTGTAGAATATCAAAGGTTGCCTCCAAACCAGATGGCTGACAAGTGGATACCTCTCCAAGGGGTGAAAAGAGGTGAAATTCATGTCCAAATCACTAGAAAAGTTCCAGAGTTGCAGATGAGGCAAAGTCTAGACTCTGAACCTTCCTTGAGTAAACTACACGAAATTCCTAACCAGATAAAACAGATGATGATCAAGTTCAGGTCCTTCATAGAGGATGGAAATCTTGAAGGACTCTCTACAACATTGAGTGAGCTAGAAACTCTAGAGGATACACAGGAAGGTTATATAGCTCAGCTGGAGACTGAACAAATGCTTCTTCTCAGCAAAATAAAGGAACTTGGCAAAGAGATCATTAATTCTTCTCCTTCCCTCAGCAGAAGATCTTCTTCAGCTGGAAACTGA 2448 0.4154 MTLKKRVLSINIEEAAVDFFNHLLQEKPRIPVFIPLILIAWAVERWLFSASSWVPLALAVWTTIQYGKYQRKLLVEDLDKKWKRIILNVSPITPLEHCEWLNKLLTEVWSNYFNAKFSIRLSAIVEKRIKLRKPRLLERVELQEFSLGSCPPSLALRGMRWSTIGDQRFLQLGFDWDTSEMSILLLAKLAKPLIGTARIVINSLHIKGDLLATPILDGKALLYSFVSTPEVRIGVAFGSGGSQSLPATEWPVVSSWLEKLFADTLVKTMVEPRRRCFTLPAVDLRKKAVGGIVYIRVISANKLSGSCFKTSRRQSNGATNGYSEENFDDKDLETFVEVEVEELTRRTDVRLGSTPRWDAPFNMVLHDNTGTLRFNLYQSHPNNVRCDYLASCEIKLRHVEDDSTIMWAVGPDSGVIAKQAQFCGEEIEMLKVSIVVKEWQFSDGSHSLNSIRSSNSQQSINGSPNFQLKTGRKISVTVAEGKDLAAKDKNGKFDPYIKLQYGKVVQKSRTGHTPNPVWNQTFEFDEIGGGEYLKIKGFSEEIFGDENIGSAHVNLEGLVDGSVRDVWIPLERVRSGELRLQISVRVDDQEGSKGSGFGSGNGWIELVLIEGRDLVAADLRGTSDPYVRVHYGSFKKRTKVIYKTLNPQWNQTLEFPDDGSPLMLYVKDHNALLPTSSIGECVVEYQRLPPNQMADKWIPLQGVKRGEIHVQITRKVPELQMRQSLDSEPSLSKLHEIPNQIKQMMIKFRSFIEDGNLEGLSTTLSELETLEDTQEGYIAQLETEQMLLLSKIKELGKEIINSSPSLSRRSSSAGN 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01526 815 Gene3D C2 domain 457 586 IPR035892 -
Vimu8g01526 815 Gene3D C2 domain 591 715 IPR035892 -
Vimu8g01526 815 SMART C2_3c 473 567 IPR000008 -
Vimu8g01526 815 SMART C2_3c 292 408 IPR000008 -
Vimu8g01526 815 SMART C2_3c 603 697 IPR000008 -
Vimu8g01526 815 ProSiteProfiles C2 domain profile. 452 568 IPR000008 -
Vimu8g01526 815 Pfam C2 domain 292 402 IPR000008 -
Vimu8g01526 815 Pfam C2 domain 604 700 IPR000008 -
Vimu8g01526 815 Pfam C2 domain 473 570 IPR000008 -
Vimu8g01526 815 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 600 713 IPR035892 -
Vimu8g01526 815 CDD SMP_SF 117 277 - -
Vimu8g01526 815 ProSiteProfiles C2 domain profile. 574 698 IPR000008 -
Vimu8g01526 815 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 472 583 IPR035892 -
Vimu8g01526 815 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 325 404 IPR035892 -
Vimu8g01526 815 CDD C2 604 700 - -
Vimu8g01526 815 PANTHER OS01G0128800 PROTEIN 9 811 - -
Vimu8g01526 815 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 94 280 IPR031468 GO:0008289
Vimu8g01526 815 Coils Coil 778 798 - -
Vimu8g01526 815 Gene3D C2 domain 290 423 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01526 Vimu-Chr8 21153356 21160037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01526 362 735 Lipid Metabolism Gene Families AT3G61300 24.228 3.53e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01526 - - gmx:100789237 1456.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01526 8 21153356 21160037 Vimu11g04773 11 67878593 67884419 ECH
Vimu8g01526 8 21153356 21160037 Vimu8g01526 8 21153356 21160037 ECH
Vimu11g04773 11 67878593 67884419 Vimu8g01526 8 21153356 21160037 PCT