Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04773 ATGCCTTGGTTATCTCCCAAATCTTCCATTCCTGATCCTCGATGGATATGCATTTCTTGCTATGCTCTGCTAAGAGCATCTTCAGAAAATCAGAAAGTTGGTTTTATTTCCCTCACTGCCATGAGTAGTAAGAAGAGGTTCAATCATGTTCATCTTGAAGATGCTGCAGTGGACTTGTTAAACCATGTGGTGAAGGTGAAGGAGAAGATGGGCTGGATTTCACTCCTCCTTCCTCTCATATTCATTGCTTGGGCTATTCACAGATGGCTATTTTCTTTCTCCAATTGGCTTTCTCTTGCTCTTGCTCTGTGGGCATCTATGCAATATGGGAAGTATCAGCGCAAACTGCTGGAGGAAGACTTGAATAAGAAATGGAATCGAATCCTACTCCAAACCTCGCCAGTGACACCATTGGAACACTGCGACTGGTTGAATCTGCTGTTGACACAAATATGGTCCAACTATTTTAACCCCAAGTTCTCAAGAAGGTTATCAGCCATAGTTGAAGTAAAATTTCCTCACCTCCCAATTAATGCATTGATATCTGTAATTCTGCCTATGGAATTCTATTGCATTGGAATCTGCACCAAACGTTTAAAGCTTCGAAAACCAAGATTTATAGAAAAAGTTGAGGTGCAAGAGTTTTCACTTGGATCATGCCCTCCAAGTTTGGGTCTTCAAGGGATGCGATGGTCAACCTCGGGTGATCAGCGAGTCCTGAAATTGAGTTTTGATTGGGATACAAGCGAGATGAGCATTTTGATGCTTGCTAAGCTTTCCGTTGGAACAGCCAGAATCTTGATTAACAATCTTCATATAAAGGGTGAGCTTTTGGTGACTCCAGTTCTAGATGGAAAGGCACTTCTGTATTCATTTTCGTCCACACCTGAGGTGAGAATAGGAATTGCCTTTGGAAGCGGAGCAAGCCAATCAGCCACTGAGTTGCCTGGGGTTTCTCCATGGCTGGATAAACTTTTTACTGATACGTTGGTTAAAACCATGGTGGAACCTCGACGTCGTTGTTTCAGTCTGCCTGTGGTTAATTTGGGGAAAACTGCTGTTGGAGGCGTTATATACGTGTCGGTGATTTCAGCAGACAAACTTTCTTGGAGTTGCTTCAAGAGTAGCCGATCTTTGAGGCAACAGAATAGCACAATCAATGGATGTTCAGAAAGCAACCTGGATGACAAGGAACTACAGACATTTGTAGAGGTAGAAGTGGAGGAATTGACAAGGAGGACGGGACTGAGTCATCGTTCAAATCCAACGTGGGATACTACATTTAATATGGTTTTACATGATAATACAGGAATTGTTCGCTTCAATCTTTATGAGCGTCCTTCTAGCGGTGTAAAGTGTGACCACCTAGCAAGTTGTGAAATCAAGATGAGGCATTGTGAAGATGATTCAACAATAATGTGGGCAATAGGACCTGATTCTAGTGCAATAGCAAAACATGCGAAGTTCTGTGGAGATGAAGTTGAAATGGTTGTCCCATTTGAGGGTACCAACTCAGCAGAGTTAAAGGTGAAGATTGTAGTAAAAGAGTGGCAGTTTTCTGATGGTTCACATAGCTTGAACAACCTCCGTGCAAATTCTCAGCGATCACTTATTGGATCATCAACTCTTCTGTCAAAAACTGGAAGGAAACTTAAGATAACAATTGTGGAAGCAAAGGATCTCGTTACGAAAGACAGATCTGGAAAAGTTAGTCCATACGTCAAATTGCAATATGGAAAGGTTGGTAAGAGAACAAAGGTTGCTCCTCCTACTACTACAAATCTTTCCTGGAATGAATCATTTGATTTTGATGAGAATGACGGTGATGAATACCTAAATGTAAAATGCTTCAGTGAAGAAATTTTTGGAGATGAAAATATTGGTACTGCAAATGTAAATTTGGAAGGACTGGGGGACGGGTCAATCAAGGATGAATGGATCCCACTTGAAGGAGTGGGTTCTGGTGAATTAAGACTTAAAATTGAAGTAGTTAGGGTGGAGGACCAAGAAGGATCAAGGAGTTCAGCCAATGGTTGGATAGAACTTGTTGTGATTGAAGCAAGAGACCTTATTGCTGCCGATCTTCGAGGGACAAGTGATCCTTATGTGAGGGTGAACTATGGGAACTTGAAGCGGAGGACAAAGGTTATACACAAAACTCTCAACCCTCGTTGGAACCAAACCTTAGAGTTCCTTGACGATGGTAGTCCCCTGACACTGCATGTTAGGGACCATAATGCTTTACTACCCACATCAAGTATAGGGGAATGTGTTGTAGAATATCAAAGGTTACCTCCAAACCAGATGTCTGACAAATGGATACCTCTCCAAGGGGTTAAAAGTGGCGAGATACACATACAAATTACCAGAAAAGTCCCAGAAATGCAAACAAGAAGTTCCCTAGACTCTCAACCATCTTCTTTAAGTAAATCACACCAAATTCCTACCCAGATGAGAGAGATGTTGAATAAGTTTCGATCATTAATAGAGGATGGAAATCTTGAAGGACTGACATCAACTTTGAGCGAGTTAGAAAGTCTAGAGGATACAATGGAAGGGTACGTAGCACAGCTGGAGACCGAGCAAATGCTTCTTCTCAGCAAAATAAATGAACTGGGTCAAGAAATCCTCAATTCTTCTTCTTCCCTCTCTAGCAGTCCTTCTCAAAATGGAAATTAA 2679 0.4169 MPWLSPKSSIPDPRWICISCYALLRASSENQKVGFISLTAMSSKKRFNHVHLEDAAVDLLNHVVKVKEKMGWISLLLPLIFIAWAIHRWLFSFSNWLSLALALWASMQYGKYQRKLLEEDLNKKWNRILLQTSPVTPLEHCDWLNLLLTQIWSNYFNPKFSRRLSAIVEVKFPHLPINALISVILPMEFYCIGICTKRLKLRKPRFIEKVEVQEFSLGSCPPSLGLQGMRWSTSGDQRVLKLSFDWDTSEMSILMLAKLSVGTARILINNLHIKGELLVTPVLDGKALLYSFSSTPEVRIGIAFGSGASQSATELPGVSPWLDKLFTDTLVKTMVEPRRRCFSLPVVNLGKTAVGGVIYVSVISADKLSWSCFKSSRSLRQQNSTINGCSESNLDDKELQTFVEVEVEELTRRTGLSHRSNPTWDTTFNMVLHDNTGIVRFNLYERPSSGVKCDHLASCEIKMRHCEDDSTIMWAIGPDSSAIAKHAKFCGDEVEMVVPFEGTNSAELKVKIVVKEWQFSDGSHSLNNLRANSQRSLIGSSTLLSKTGRKLKITIVEAKDLVTKDRSGKVSPYVKLQYGKVGKRTKVAPPTTTNLSWNESFDFDENDGDEYLNVKCFSEEIFGDENIGTANVNLEGLGDGSIKDEWIPLEGVGSGELRLKIEVVRVEDQEGSRSSANGWIELVVIEARDLIAADLRGTSDPYVRVNYGNLKRRTKVIHKTLNPRWNQTLEFLDDGSPLTLHVRDHNALLPTSSIGECVVEYQRLPPNQMSDKWIPLQGVKSGEIHIQITRKVPEMQTRSSLDSQPSSLSKSHQIPTQMREMLNKFRSLIEDGNLEGLTSTLSELESLEDTMEGYVAQLETEQMLLLSKINELGQEILNSSSSLSSSPSQNGN 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04773 892 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 137 345 IPR031468 GO:0008289
Vimu11g04773 892 CDD C2 680 776 - -
Vimu11g04773 892 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 675 789 IPR035892 -
Vimu11g04773 892 ProSiteProfiles C2 domain profile. 532 647 IPR000008 -
Vimu11g04773 892 CDD SMP_SF 203 342 - -
Vimu11g04773 892 SMART C2_3c 357 475 IPR000008 -
Vimu11g04773 892 SMART C2_3c 550 646 IPR000008 -
Vimu11g04773 892 SMART C2_3c 679 773 IPR000008 -
Vimu11g04773 892 Gene3D C2 domain 666 791 IPR035892 -
Vimu11g04773 892 Gene3D C2 domain 536 665 IPR035892 -
Vimu11g04773 892 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 353 467 IPR035892 -
Vimu11g04773 892 Pfam C2 domain 680 776 IPR000008 -
Vimu11g04773 892 Pfam C2 domain 550 649 IPR000008 -
Vimu11g04773 892 Pfam C2 domain 385 468 IPR000008 -
Vimu11g04773 892 Coils Coil 844 875 - -
Vimu11g04773 892 PANTHER OS01G0128800 PROTEIN 42 171 - -
Vimu11g04773 892 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 549 666 IPR035892 -
Vimu11g04773 892 ProSiteProfiles C2 domain profile. 653 774 IPR000008 -
Vimu11g04773 892 MobiDBLite consensus disorder prediction 794 814 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04773 Vimu-Chr11 67878593 67884419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04773 679 784 Lipid Metabolism Gene Families AT1G51570 31.579 2.74e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04773 - - ccaj:109803570 1384.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01526 8 21153356 21160037 Vimu11g04773 11 67878593 67884419 ECH
Vimu11g04773 11 67878593 67884419 Vimu11g04773 11 67878593 67884419 ECH
Vimu11g04773 11 67878593 67884419 Vimu8g01526 8 21153356 21160037 PCT