Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01525 ATGGCGTTCTCTAACACTTGCAAACTTTCAGAATTTTCTTTCTCAGCATTCAATTCTCCTTCTCCTTGTCGCTCTTTCCACAAATTCCCATTTCGTACACTCACCTTCGCTTCTCTCCCAACCCCTAAATCCAACGTGTCTGCACCCTGGCTAACCAAATCACCTTCTCCCAAAAAGGTCACCGAACCCCTCACTGCCGACGACCCAATTCACCGGACAACCCCAAAACAACCACAGAACGCCGTCGAGAGGATCGTCCTTCGGTTGCGCAACTTGGGTCTGCCTTCAGAAGAAGAAGAGCAACAAGAACAACAGGAGGAGGTTCCGACAAGTAGTCCTGCGCCGGTGACCGGAGATGAGAGGCTGAGCGAGTTGCTCCGGCGGGAGTGGGTTCGGCCGGACGTCGGACTGGTGGGCGAGGATGGGGAGGAGGAGATGCTGCTGCCGTGGGAGAGGGAGGAGGAGAAGGTGATGGTGGTTGGGAGTGGAAGGGATGAAGAAGGGTTGAAGAAGAGGAGGGTTACGGCTCCTAGTTTGGCTGATTTGACCCTTGAGGATGAGTTGCTGAGGAGGTTGAGGAGAGAGGGGATGCGTGTGAGGGAGAGGGTGAGTGTTCCCAAGGCTGGACTCACTCAGGAGGTGATGGAGAAGATTCATACGAGGTGGATGAAGGAAGAATTGGTGAGGCTCAAGTTTCATGAGGAACTTGCGAAGGATATGAGGAAGGCTCATGAGATTGTTGAGAATGTTGCTACTTGCTGTGTGATTCTGTGTATGTTGAATGCTGCTGTTGACTTTGTGTTTTGTGTGAGGAACAATGGACTGATTAGTTGTAGTGTGCAGCGTCGAACTGGAGGATTGGTTACATGGAGGGCAGGGAGTGTTATGATGGTGTATCGTGGTATTGATTACCAAGGGCCTGACTCGAGGAAGGAAGTTAATGACAAGAAAGATAATGACTTTTTTGTGCCTGATGTCTCATCAGGAAGTTTGTTGAAAAGTGAAGTCAGTAATGCAGTGTCATCTCTAGAAAAGAGTGAGGTGATGGAGAGGGAGCAAGAACAGTCTAAGAATGTGACAGAGGCGGAAGCAGAGTACAATGCACTTCTTGATGAATTAGGTCCCCGTTTTGTTGGATGGTGGGGTACGGGGATACTTCCAGTTGATGCTGATTTACTTCCAAGAACCGTTCCAGGTTACAAAACACCGTTTAGGCTTCTTCCTACAGGAATGCGTTCTCGGCTAACAAATGCAGAGATGACCAATTTAAGGAAACTTGCAAAATCACTTCCTTGTCATTTTGCCTTAGGGAGAAATAGAAATCACCAAGGTCTAGCATGTGCTATTCTTAAGCTTTGGGAGAAAAGTTTAGTTGTGAAGATTGCTGTCAAACCTGGCATCCAGAACACAAACAATGAACTGATGTCTGATGAGCTGAAGATGTTAACAGGAGGTACCTTGCTGCTAAGGAATAAATATTTCATTGTTATATACCGTGGGAAAGACTTCGTTCCAACAAGTGTGGCTACTGTTTTAGCTGAAAGAGAGGAAATGACAAAGCAAGTACAGGATGTTGAAGACAAGTTCCGGTGCAGAGCAGTTGATGCAATTCCATCTGGGCAAGGTGAGGCAACAGCACAGGCTGGGACTCTAGCAGAGTTCTACGAGGCCCAGGCTCGATGGGGAAGGGAAATATCTCCTGGAGAACGGGAGAAGATGGTGGAAGAAGCTGCCAAAGCCAAGACTGCTAAGCTTGTCAGAAAAATTGAACATAAACTATTTTTAGTAAGTATCTATATATTTCTATATGATATTAGTGATAGTACTTGGTTCATTTCACCTGAAAGTCAGACTTGGTATTTACTTTTTTGGTGTCTTTACAAAACTGGACTTTCTTTGTTCATCATATTTACTATTCTATTGTCTGAACAGGCCCAGACCAAAAAGCATAGAGCAGAAAGGCTCTTAGCTAAAATAGAAGCGTCGATGGTTCCAGCCGGTCCTGATTATGACCAGGAAACAATCACAGATGAAGAACGTGTTATGTTCCGTAAAGTTGGTTTAAGAATGAAACCATACTTACCACTTGGTATACGTGGTGTTTTTGATGGTGTTGTCGAGAATATGCATTTGCATTGGAAACACCGAGAACTTGTAAAATTGATGACAAAACAAAAGACTCTTGCTTTTGTGGAAGACACAGCAAGGTTACTTGAATATGAGAGTGGTGGAATACTGGTTGCAATAGAAAAAGTTTCCAAAGAATTTGCTATTATTTACTATCGTGGAAAGAATTACAAGCGGCCAATTAATCTGAGGCCAAGAAACCTTCTAACGAAGGGAAAGGCACTAAAGCGACATGTGGCTATGCAACGACACGAGGCTCTGAGTCAGCATATTACTGAACTGGAAAAAACTATAGAAGAATTGAAAAAAGAACTTGATAAGCCTCAAGATTTGGAAGATGAAGATGGGGCCAGCACAGAGGAAGAGGATCTTAACCAAATAGACAACATCTCAGAATTGACCCTAAGTGAGAATGAAGATTCTGATGGTTTTGATGATGAGGAAGAAAGTGACTGGTTAGATGATGGGGAAGAAAGTGATTGGGAAGATGATGAAGACCCGAGTTTTCCAAATTCATAA 2646 0.4452 MAFSNTCKLSEFSFSAFNSPSPCRSFHKFPFRTLTFASLPTPKSNVSAPWLTKSPSPKKVTEPLTADDPIHRTTPKQPQNAVERIVLRLRNLGLPSEEEEQQEQQEEVPTSSPAPVTGDERLSELLRREWVRPDVGLVGEDGEEEMLLPWEREEEKVMVVGSGRDEEGLKKRRVTAPSLADLTLEDELLRRLRREGMRVRERVSVPKAGLTQEVMEKIHTRWMKEELVRLKFHEELAKDMRKAHEIVENVATCCVILCMLNAAVDFVFCVRNNGLISCSVQRRTGGLVTWRAGSVMMVYRGIDYQGPDSRKEVNDKKDNDFFVPDVSSGSLLKSEVSNAVSSLEKSEVMEREQEQSKNVTEAEAEYNALLDELGPRFVGWWGTGILPVDADLLPRTVPGYKTPFRLLPTGMRSRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLACAILKLWEKSLVVKIAVKPGIQNTNNELMSDELKMLTGGTLLLRNKYFIVIYRGKDFVPTSVATVLAEREEMTKQVQDVEDKFRCRAVDAIPSGQGEATAQAGTLAEFYEAQARWGREISPGEREKMVEEAAKAKTAKLVRKIEHKLFLVSIYIFLYDISDSTWFISPESQTWYLLFWCLYKTGLSLFIIFTILLSEQAQTKKHRAERLLAKIEASMVPAGPDYDQETITDEERVMFRKVGLRMKPYLPLGIRGVFDGVVENMHLHWKHRELVKLMTKQKTLAFVEDTARLLEYESGGILVAIEKVSKEFAIIYYRGKNYKRPINLRPRNLLTKGKALKRHVAMQRHEALSQHITELEKTIEELKKELDKPQDLEDEDGASTEEEDLNQIDNISELTLSENEDSDGFDDEEESDWLDDGEESDWEDDEDPSFPNS 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01525 881 MobiDBLite consensus disorder prediction 847 881 - -
Vimu8g01525 881 MobiDBLite consensus disorder prediction 813 881 - -
Vimu8g01525 881 SUPERFAMILY YhbY-like 674 772 IPR035920 -
Vimu8g01525 881 Coils Coil 345 372 - -
Vimu8g01525 881 MobiDBLite consensus disorder prediction 822 836 - -
Vimu8g01525 881 FunFam CRM-domain containing factor CFM3B, chloroplastic 674 776 - -
Vimu8g01525 881 Coils Coil 642 662 - -
Vimu8g01525 881 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 41 596 IPR045278 GO:0000375|GO:0003729
Vimu8g01525 881 SMART CRS1_YhbY_2 184 300 IPR001890 GO:0003723
Vimu8g01525 881 SMART CRS1_YhbY_2 675 762 IPR001890 GO:0003723
Vimu8g01525 881 SMART CRS1_YhbY_2 415 499 IPR001890 GO:0003723
Vimu8g01525 881 FunFam CRS2-associated factor 1, chloroplastic 414 510 - -
Vimu8g01525 881 SUPERFAMILY YhbY-like 415 506 IPR035920 -
Vimu8g01525 881 MobiDBLite consensus disorder prediction 45 82 - -
Vimu8g01525 881 MobiDBLite consensus disorder prediction 96 118 - -
Vimu8g01525 881 Coils Coil 793 820 - -
Vimu8g01525 881 Gene3D - 182 264 IPR035920 -
Vimu8g01525 881 Gene3D - 414 507 IPR035920 -
Vimu8g01525 881 Coils Coil 508 528 - -
Vimu8g01525 881 ProSiteProfiles CRM domain profile. 413 510 IPR001890 GO:0003723
Vimu8g01525 881 Pfam CRS1 / YhbY (CRM) domain 415 499 IPR001890 GO:0003723
Vimu8g01525 881 Pfam CRS1 / YhbY (CRM) domain 185 300 IPR001890 GO:0003723
Vimu8g01525 881 Pfam CRS1 / YhbY (CRM) domain 676 762 IPR001890 GO:0003723
Vimu8g01525 881 ProSiteProfiles CRM domain profile. 673 773 IPR001890 GO:0003723
Vimu8g01525 881 SUPERFAMILY YhbY-like 183 258 IPR035920 -
Vimu8g01525 881 ProSiteProfiles CRM domain profile. 182 311 IPR001890 GO:0003723
Vimu8g01525 881 Gene3D - 675 778 IPR035920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01525 Vimu-Chr8 21147280 21152344 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01525 - - gmx:100788177 1176.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01525 8 21147280 21152344 Vimu8g01525 8 21147280 21152344 ECH
Vimu11g04772 11 67873491 67877956 Vimu8g01525 8 21147280 21152344 PCT