Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04772 ATGCGTTTGAACGTCACAAATGCTTTACTATCATCACTCCCACTCGCTCTACCCTCTTCCAAATTCAAATTCACATTCCCAGTAGGAATTTGCATTCGCGTTCGTGCTCTCAACACCTTCTCCTCTCTCCCAACTACTTGCCACGAAGACCACGATGATTTGTTCGCCCCTATTCCCACTCTCCGCCACGCTGACAAAACCACCAACGCCATCGAGAGAATCGCCCTACGTTTGCGCAACTTAGGGTTAGCCTCCGCCGACCACGCCGACGACGACGATTTCCTGCGTCGCGAATGGCTTCGTCCCGATGAGGTGCTTTTGCCGTGGGACAAGCGAGAGGGGGAAGAGTTCGAGGAGCACGAGGAACAGCAGAAGGAGAAACTAAAGAAGAAGAGTGTTAATGCAGTGACACTGGCGGAGAAAACCCTGGAGGAGGAGGAGCTGCGGCGGTTGCGAACGCTGGGAATGAGTCTTAAGGAGAAGGTCACTATCCCCCAAGCTGGCCTGACGCGAGCCGTGCTCGACAGGATTCACCGGCAGTGGAGCAACTGCGAGCTGTGTAGAACTAGAGGGTTAGTTATATGGAGGTCGGGGAGTTATATGTGGGTGTACCGAGGTAGAAATTACCAAGGGCCAATGCAACCGATTGAAAAGGAAGGAGATGATCGAATTCCTGTGCCATCAGATGGGGACGCGGCGCTGTTGCTGGCAAAGAGTGAGGCAGTTTTCTGGAAGGAGGAGAACATGACTCCAGAAGAAGTGGAGTTTAACAAGATGCTTGATGGGTTTGGTCCTCGTTATGTTGAATGGTGGGGCACCGGAATACTTCCAATTGATGCTGATTTACTTCCCCCCACAGTTCCTGGTTACAAGACGCCTCTTAGGCTTCTTCCTGCTGGAATGCATCCACGACTGACTAATGATGAACTCACGAATATGCGGAAACTTGCTAAATCTCTTCCTTGTCACTTTGCCTTGGGGAGAAATAGAAATCTTCAAGGTCTGGCATCTGCTATTCTCAGGCTGTGGGAGAAAAGTTTAGTTGCAAAGATTGGAGTCAAGCGTGGTATTGTGAATACAAACAATGAACTGATGGCTCAGGAGCTGAAGAAATTAACAGGAGGTACTTTACTCCTGCGGAACAAATATTACATTGTAATATATCGTGGGAAGGACTTTGTTCCAACCAGTGTGGCTGCTGTTATTGCTGAAAGACAGGAAATGACAAAACATGTGCAGGATGTTGAGGAGAAGGTGCGGTGCAAAGTTCATGACATATCTCCTTCAAGAGAAGATGAATCAAAATCGCAAGCAGGATCATTGGCTGAGTTCTATGAGGCTCAGGCATGCTGGGGAAGGGATATATCTACTGAAGAACGTGAGAGGATGAGGCAAGAGGTTGCCAAAGCCAAGAATGCTAAGCTTGCCAAAAAAATTGAACGTAAACTAGCTGTTGCCCAAGCCAAAAGGCTTAGAGCAGAAAAGCTATTAGCGAAAATAGAAGTATCTTTGGTTCCAGTTGGTCCTGATTATGACAAGGAAACAATCACAGATGAAGAACGTGTTATGTTCCGTTCAGTTGGTTTAAGAATGAAGGCATACTTGCCTCTTGGTATACGTGGTGTTTTCGATGGTGTCATTGAGAATATGCATCTGCACTGGAGGCATCGAGAACTTGTTAAATTAATAACAAAACAAAAGACCCTTGCTTTTGTTGAAGACACAGCTAGGTTATTGGAATATGAGAGTGGTGGAATACTAGTAGCAATAGATGAAATTCCTAAAGGATTTTCTCTTATTTACTATCGTGGAAAGAATTATAGGCGACCTATGGCTATAAGGCCTAGAAACCTTCTAACAAAGGCAAAGGCATTGCAGCGGTCAATAGCCATGCAACGGCACGAGGCTCTGAGTCAGCATGTAACTGAATTGGGGGAAAAAATAGAAAAAATGAGAAAAGAACTTAGTGAGGACGAATTCTCTGACAGAGATGACAATTATGGTGATTTCAATGGCGAGGAATACAGTGATTACAATGATAAGAATTCTGAATTTTAG 2058 0.4582 MRLNVTNALLSSLPLALPSSKFKFTFPVGICIRVRALNTFSSLPTTCHEDHDDLFAPIPTLRHADKTTNAIERIALRLRNLGLASADHADDDDFLRREWLRPDEVLLPWDKREGEEFEEHEEQQKEKLKKKSVNAVTLAEKTLEEEELRRLRTLGMSLKEKVTIPQAGLTRAVLDRIHRQWSNCELCRTRGLVIWRSGSYMWVYRGRNYQGPMQPIEKEGDDRIPVPSDGDAALLLAKSEAVFWKEENMTPEEVEFNKMLDGFGPRYVEWWGTGILPIDADLLPPTVPGYKTPLRLLPAGMHPRLTNDELTNMRKLAKSLPCHFALGRNRNLQGLASAILRLWEKSLVAKIGVKRGIVNTNNELMAQELKKLTGGTLLLRNKYYIVIYRGKDFVPTSVAAVIAERQEMTKHVQDVEEKVRCKVHDISPSREDESKSQAGSLAEFYEAQACWGRDISTEERERMRQEVAKAKNAKLAKKIERKLAVAQAKRLRAEKLLAKIEVSLVPVGPDYDKETITDEERVMFRSVGLRMKAYLPLGIRGVFDGVIENMHLHWRHRELVKLITKQKTLAFVEDTARLLEYESGGILVAIDEIPKGFSLIYYRGKNYRRPMAIRPRNLLTKAKALQRSIAMQRHEALSQHVTELGEKIEKMRKELSEDEFSDRDDNYGDFNGEEYSDYNDKNSEF 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04772 685 ProSiteProfiles CRM domain profile. 514 614 IPR001890 GO:0003723
Vimu11g04772 685 Pfam CRS1 / YhbY (CRM) domain 143 188 IPR001890 GO:0003723
Vimu11g04772 685 Pfam CRS1 / YhbY (CRM) domain 305 389 IPR001890 GO:0003723
Vimu11g04772 685 Pfam CRS1 / YhbY (CRM) domain 517 603 IPR001890 GO:0003723
Vimu11g04772 685 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 188 678 IPR045278 GO:0000375|GO:0003729
Vimu11g04772 685 Gene3D - 142 190 IPR035920 -
Vimu11g04772 685 Gene3D - 515 614 IPR035920 -
Vimu11g04772 685 Gene3D - 304 399 IPR035920 -
Vimu11g04772 685 FunFam CRM-domain containing factor CFM3B, chloroplastic 515 617 - -
Vimu11g04772 685 Coils Coil 398 418 - -
Vimu11g04772 685 Coils Coil 634 654 - -
Vimu11g04772 685 SUPERFAMILY YhbY-like 142 213 IPR035920 -
Vimu11g04772 685 ProSiteProfiles CRM domain profile. 141 256 IPR001890 GO:0003723
Vimu11g04772 685 SMART CRS1_YhbY_2 143 205 IPR001890 GO:0003723
Vimu11g04772 685 SMART CRS1_YhbY_2 305 389 IPR001890 GO:0003723
Vimu11g04772 685 SMART CRS1_YhbY_2 516 603 IPR001890 GO:0003723
Vimu11g04772 685 FunFam CRS2-associated factor 1, chloroplastic 304 400 - -
Vimu11g04772 685 ProSiteProfiles CRM domain profile. 303 400 IPR001890 GO:0003723
Vimu11g04772 685 Coils Coil 453 496 - -
Vimu11g04772 685 SUPERFAMILY YhbY-like 305 396 IPR035920 -
Vimu11g04772 685 SUPERFAMILY YhbY-like 515 612 IPR035920 -
Vimu11g04772 685 MobiDBLite consensus disorder prediction 655 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04772 Vimu-Chr11 67873491 67877956 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04772 - - vra:106765477 1190.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04772 11 67873491 67877956 Vimu11g04772 11 67873491 67877956 ECH
Vimu11g04772 11 67873491 67877956 Vimu8g01525 8 21147280 21152344 PCT