Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01351 ATGCGGCACGCGGCACGTGGTGTTGTAAAAAGTATTGTAAAAAACCACTTGTTAAAATATCGCTACCCTATAATAATATCCAAACACTGTCCTTTATATACCCCCACGCTTGACACTCCACAAAACATTCCAATTCATCTCTTCCAACACATACAACAACAGAGTCTCATTCATTCACTCACCACTCACCATCTTCAAACAATGGAAATCCAAAAAAGCCCAAGCCCAAGCCCACAGTTGGCGGCGGCGAGGAAGCTCTGGAACGTAGTACGGATCGTGTTCTTGATGTTGAGAAAAGGCATAGCGAAGAGTAAACACGCCGTTGACTTCAACTTCAACGGCGGCAAACTCGCCGCCGCCAAAGCCATCCTCCATCTCCAGCGCCACCACCACGACGCCGTTTATCCCCACCGCGACTACGAGTTCAGCTGCAGCAACAGCCCCGCCGTCACCTTCCCCTTCCACGTCACGAAACGCGGCAAACACCGAACCCGGTTCCCCCAGTACGGCGACGCTTCGAGCGTTCAGAAAGTGCTGGAGATTCTGAACAGCAATAACCCGACGGAGGGTTCTCCTCTGGTGAAGAGTCCGATTGGGAAGAAAGTGAGAATCACAGACTCTCCCTTCCCTCTGAAGGAGGAGGAAGAAGACAACCAGGTTGACGTGGCGGCTGAGGAGTTCATCAAGAGGTTTTACAAAGACCTCAACTTGCAGCAGAAAATGGCTGCCATTGAATCACCCTACCATTCTAACTTCTGGGGCAGATGA 768 0.5078 MRHAARGVVKSIVKNHLLKYRYPIIISKHCPLYTPTLDTPQNIPIHLFQHIQQQSLIHSLTTHHLQTMEIQKSPSPSPQLAAARKLWNVVRIVFLMLRKGIAKSKHAVDFNFNGGKLAAAKAILHLQRHHHDAVYPHRDYEFSCSNSPAVTFPFHVTKRGKHRTRFPQYGDASSVQKVLEILNSNNPTEGSPLVKSPIGKKVRITDSPFPLKEEEEDNQVDVAAEEFIKRFYKDLNLQQKMAAIESPYHSNFWGR 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01351 255 Pfam Cotton fibre expressed protein 217 239 IPR008480 -
Vimu8g01351 255 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 81 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01351 Vimu-Chr8 19976449 19977771 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01351 - - vra:106768173 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01351 8 19976449 19977771 Vimu11g02880 11 48682220 48683701 ECH
Vimu8g01351 8 19976449 19977771 Vimu4g00267 4 1828344 1828943 ECH
Vimu8g01351 8 19976449 19977771 Vimu8g01351 8 19976449 19977771 ECH
Vimu11g04666 11 67093258 67093860 Vimu8g01351 8 19976449 19977771 PCT