Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02880 ATGGAAAACAATTCAGCAGTGATTGCAAAGAGAGTGTGGAACGTAATACGTGTTGCATTCTTCATGTTGAGAAAAAGCATATCAAAGGGCAAGCTAATGATGCACCTTAACGTCATGCTCAAACGCCGCAGCAAACTCGCCGGCAAAGCCATCACCAACCTCATGTTCCACCACCACAACCACCATGTCAGAGTCCCCGGCAACGACCTCCAGTTCTCAGCCGCCAGGGAGTACGAGTTCAGCTGCAGCAACACTCCCAACAACTTCTTTGCCACCAAGCGCCACCGCCACAACCCTTTCTTCACGTGCGCACACGCGCCGCCCACCTTCGAGGACGAGGCCCTGACCGTTAATGTCATTAAGGGCGTGTTGGAGATGCTGAACAATGAGGCGGTGGTGGAGGCGCCCCCGGCCGCCGCTTTTCGTAGCCCTGTGGTGAGGCAGCTTAGAGTTACAGACTCTCCGTTCCCACTTCGTGAGTACGAGGACGACAACGACAACAACCATGTAGACAAGGCGGCGGAAGAATTCATAAAGAGGTTTTACAAGGAATTGAAGAAGCAAACTTGA 570 0.5281 MENNSAVIAKRVWNVIRVAFFMLRKSISKGKLMMHLNVMLKRRSKLAGKAITNLMFHHHNHHVRVPGNDLQFSAAREYEFSCSNTPNNFFATKRHRHNPFFTCAHAPPTFEDEALTVNVIKGVLEMLNNEAVVEAPPAAAFRSPVVRQLRVTDSPFPLREYEDDNDNNHVDKAAEEFIKRFYKELKKQT 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02880 189 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 5 188 - -
Vimu11g02880 189 Pfam Cotton fibre expressed protein 168 188 IPR008480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02880 Vimu-Chr11 48682220 48683701 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02880 - - gmx:100801941 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02880 11 48682220 48683701 Vimu4g00267 4 1828344 1828943 ECH
Vimu11g04666 11 67093258 67093860 Vimu11g02880 11 48682220 48683701 ECH
Vimu8g01351 8 19976449 19977771 Vimu11g02880 11 48682220 48683701 ECH
Vimu11g02880 11 48682220 48683701 Vimu11g02880 11 48682220 48683701 ECH
Vimu4g00267 4 1828344 1828943 Vimu11g02880 11 48682220 48683701 PCT