Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00608 ATGGCATCCCATATTGTTGGATACCCTCGCATGGGTCCCAAAAGAGAGCTCAAGTTTGCTCTAGAGTCATTCTGGGACGGGAAGAGCAGTGCAGAGGATTTGCAGAAGGTGGCTTCTGATCTCAGAGCATCCATCTGGAAACAAATGACTGATGCTGGGATTAAGTACATCCCCAGCAACACTTTCTCATACTATGATCAGGTGCTCGATACCACTGCCATGCTTGGCGCCGTTCCAGCCAGATATGGGTGGACTGGCGGCGAGATTGGGTTTGATACCTTCTTTTCCATGGCCAGAGGAAATGCCTCTGTGCCGGCCATGGAGATGACCAAGTGCCACTTTATTGTCCCTGAATTGGGACCTGATATGAATTTTACTTATGCTTCTCACAAGGCCGTGAATGAGTACAAGGAGGCCAAGGCGCTTGGAGTAGATACAGTTCCAGTCCTCGTCGGCCCTGTAACATACTTGGCGCTCTCCAAACCTGCCAAGGGTGTTGATAAATCCTTTTGTACTTTTTCTCTCCTCCCAAAAATCCTTGCTGTCTATAAGGAAGTTGTGTCTGATCTTAAAGCAGCTGGTGCTTCATGGATTCAATTTGATGAACCTATCCTTGTCTTGGACCTTGACTCTCGAAAGTTGCAAGCAATTTCTACAGCATACGCAGAACTTGAATCTGCTTTATCTGGCTTAAATGTTCTCATTGAGACCTACTTCGCTGACGTTACTGCCGAGGCATACCAGACTCTCACATCTCTTAATGTGGCCACGGCATTCGGATTTGATTTAGTCCGTGGAACTAAGACCCTTGATCTAATCAAGGGTGGGTTTCCCAGTGGAAAGTACTTGTTTGCTGGAGTTGTTGATGGAAGAAACATCTGGGCTAATAATCTTGCTACTTCACTCGATACATTGAATAGTCTTGAGGCCATTGTGGGCAAAGATAAACTTGTTGTGTCCACCTCCTGCTCACTTCTTCACACGGCTGTTGATCTTGTTAATGAGACCAAGTTGGATAATGAGATCAAATCATGGCTGGCTTTTGCGGCCCAAAAAATTGTTGAAGTAAATGCATTGGCTAAGGCATTGGCTGGTCAAAAGGATGAGTCCCATAATAACAATAGCATGTATGACGAAGTTAGCCAAATATTTTGTTCGCAAGCCTTTTTCTCTTCTAATGCTTCTGCTCAGGCTTCAAGAAAGTCCTCTCCAAGAGTGACTAATGAGGCCGTTCAGAAGGCTGCTGCTGCATTGAAGGGTTCTGATCATCGCCGCGCCACAAATGTCAGCACTAGATTGGATGCTCAACAAAAGAAGCTCAACCTTCCAATCCTCCCAACTACCACCATCGGATCCTTCCCTCAGACTGTTGAACTGAGGAAGGTGCGTCGGGAATACAAGGCTGGCAAGATCTCCGAGGAGGAGTATGTTAATGCAATCAAAGAGGAAATCCGGAAAGTTGTTGAACTCCAAGAGCAGCTTGATATTGATGTCCTGGTACACGGGGAGCCTGAGAGGAATGATATGGTGGAGTACTTTGGTGAGCAGTTATCAGGCTTTGCCTTCACCGTTAACGGGTGGGTGCAATCTTATGGATCTCGTTGTGTGAAGCCACCAATCATCTATGGTGATGTGAGTCGCCCCAAGGCAATGACCGTCTTCTGGTCGTCCACTGCTCAGAGCATGACCAAACGCCCGATGAAGGGAATGCTAACTGGCCCTGTCACTATTCTCAACTGGTCCTTTGTTCGAAATGATCAGCCTAGGTCTGAGACCACCTACCAGATTGCTTTGGCTATCAAGGACGAAGTAGAAGATCTTGAAAAGGCTGGTATTACTGTTATCCAAATCGATGAGGCTGCTTTGAGAGAGGGCTTACCATTGAGAAAGTCAGAGCAAGCTAACTACTTGGACTGGGCAGTTCATGGTTTCAGAATCACCAATGTTGGTGTGAAGGATACAACTCAGGTACTTCTGGCCTACAATCAATGGATTCACACCCACATGTGCTACTCTAACTTCAATGATATCATCCATTCAATCATTGATATGGATGCTGATGTGATCACCATTGAGAACTCTCGCTCTGATGAAAAGCTCTTGTCAGTGTTCCGCGAAGGAGTCAAGTATGGAGCTGGAATTGGCCCTGGAGTGTACGACATTCACTCTCCAAGAATACCACCAACTGAAGAAATTGCTGATAGGATCAACAAGATGCTTGCAGTGCTTGAGCGAAACATTTTGTGGGTCAACCCTGACTGTGGTCTCAAGACTCGTAAGTACGCCGAGGTGAATCCAGCTCTCACAAACATGGTTGCTGCCACAAAAGTCATCCGTAACCAGCTTGCTAAGTGA 2355 0.4641 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVASDLRASIWKQMTDAGIKYIPSNTFSYYDQVLDTTAMLGAVPARYGWTGGEIGFDTFFSMARGNASVPAMEMTKCHFIVPELGPDMNFTYASHKAVNEYKEAKALGVDTVPVLVGPVTYLALSKPAKGVDKSFCTFSLLPKILAVYKEVVSDLKAAGASWIQFDEPILVLDLDSRKLQAISTAYAELESALSGLNVLIETYFADVTAEAYQTLTSLNVATAFGFDLVRGTKTLDLIKGGFPSGKYLFAGVVDGRNIWANNLATSLDTLNSLEAIVGKDKLVVSTSCSLLHTAVDLVNETKLDNEIKSWLAFAAQKIVEVNALAKALAGQKDESHNNNSMYDEVSQIFCSQAFFSSNASAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSTRLDAQQKKLNLPILPTTTIGSFPQTVELRKVRREYKAGKISEEEYVNAIKEEIRKVVELQEQLDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSTAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRSETTYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQANYLDWAVHGFRITNVGVKDTTQVLLAYNQWIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADRINKMLAVLERNILWVNPDCGLKTRKYAEVNPALTNMVAATKVIRNQLAK 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00608 784 CDD CIMS_N_terminal_like 3 362 - -
Vimu8g00608 784 Hamap 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 1 781 IPR006276 GO:0003871|GO:0008270|GO:0009086
Vimu8g00608 784 FunFam 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 403 779 - -
Vimu8g00608 784 NCBIfam 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 6 781 IPR006276 GO:0003871|GO:0008270|GO:0009086
Vimu8g00608 784 PANTHER 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE 1 783 - -
Vimu8g00608 784 CDD CIMS_C_terminal_like 446 777 IPR002629 GO:0003871|GO:0008270|GO:0009086
Vimu8g00608 784 Pfam Cobalamin-independent synthase, N-terminal domain 3 311 IPR013215 GO:0003871|GO:0008270|GO:0008652
Vimu8g00608 784 Gene3D - 403 779 IPR038071 -
Vimu8g00608 784 Coils Coil 473 493 - -
Vimu8g00608 784 Pfam Cobalamin-independent synthase, Catalytic domain 445 776 IPR002629 GO:0003871|GO:0008270|GO:0009086
Vimu8g00608 784 SUPERFAMILY UROD/MetE-like 3 373 IPR038071 -
Vimu8g00608 784 SUPERFAMILY UROD/MetE-like 410 780 IPR038071 -
Vimu8g00608 784 FunFam 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 5 392 - -
Vimu8g00608 784 PIRSF Met_synth_MetE 1 784 IPR006276 GO:0003871|GO:0008270|GO:0009086
Vimu8g00608 784 Gene3D - 5 538 IPR038071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00608 Vimu-Chr8 12649615 12653655 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00608 K00549 - gmx:100811317 1380.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03402 6 30737459 30741211 Vimu8g00608 8 12649615 12653655 PCT