Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03402 ATGGCATCTCATATCGTCGGATACCCCCGCATGGGTCCCAAGAGAGAGCTCAAGTTCGCTCTCGAGTCTTTCTGGGATGGCAAAAGCAGCGCCGAGGATTTGCAGAAGGTTGCTGCTGATCTCAGGGCATCCATCTGGAAGCAGATGGCTAATGCCGGGATCAAGTACATCCCCAGCAACACTTTCTCTTACTATGATCAGGTGCTTGATGCCACCGCCACCCTCGGCGCCGTCCCACAAAGGTATGGCTGGACCGGTGGTGAGATTGGTTTTGACACCTACTTCTCCATGGCCAGAGGTAATGCTACCGTTCCTGCTATGGAGATGACCAAGTGGTTCGACACCAACTACCACTTTATTGTCCCTGAATTGGGTCCTGATGTGAACTTCACCTATTCTTCTCACAAGGCTGTTGACGAATACAAGGAGGCCAAGGCGCTTGGAGTGGATACCGTTCCTGTCCTCGTTGGCCCAGTCACATACTTGTTGCTCTCCAAGCCTGCCAAGGGTGTGGAGAAAACTTTTAATCTCCTTTCTCTCCTTCCCAAAGTTCTTGCTGTCTACAAGGAAGTTATTGCTGACCTTAAGGCAGCTGGTGCTTCATGGATTCAATTTGATGAGCCTACCCTTGTCTTGGACCTTGAGTCTCACAAGTTGCAAGCATTTACCGATGCATATGCAGAACTTGCACCTGCTTTGTCTGGTTTGAATGTTCTTATTGAGACCTACTTTGCTGACGTCCCAGCTGAGGCATACAAGACTCTCACATCTCTGAACGGCGTCACTGCATATGGATTTGATTTAGTCCGTGGAACCAAAACTCTTGATTTGATCAAGGGTGGATTTCCAAGTGGAAAATACCTCTTTGCTGGAGTGGTTGATGGAAGGAACATCTGGGCTAATGACCTTGCTTCTTCTCTCACTACATTACAGGGTCTTGAGGGCGTTGTGGGCAAAGATAAGCTTGTTGTGTCTACCTCCTCTTCCCTTCTTCACACTGCTGTTGATCTTGTTAATGAGACCAAGTTGGATGATGAGATCAAGTCATGGCTAGCTTTTGCTGCCCAAAAAATTGTTGAAGTTAACGCATTGGCTAAGGCTTTGTCTGGCAACAAGGATGAGGCTTTCTTCTCTGCTAATGCTGCAGCTCAGGCTTCAAGAAAGTCCTCTCCAAGAGTGACTAATGAGGCTGTTCAGAAGGCTGCTGCTGCATTGAAGGGCTCAGATCATCGTCGTGCAACAAATGTCAGTGCCAGACTGGATGCTCAACAAAAGAAGCTTAACCTTCCAATCCTTCCAACCACCACCATTGGATCCTTCCCTCAGACTGTAGAATTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAGATCTCCGAGGAAGAATATGTTAAGTCAATCAAGGAGGAGATTCACAAAGTTGTTCAACTTCAAGAAGAGCTTGACATTGATGTTTTGGTTCATGGAGAGCCAGAGAGGAATGATATGGTTGAGTACTTCGGTGAGCAGTTGTCAGGCTTTGCCTTCACTGTTAATGGGTGGGTGCAATCCTATGGATCTCGTTGCGTGAAGCCACCAATCATCTACGGTGATGTGAGCCGCCCCAAGCCAATGACTGTCTTCTGGTCATCTGTAGCTCAGAGCTTTACCAAACGCCCAATGAAGGGAATGCTTACCGGCCCTGTTACCATTCTCAACTGGTCCTTTGTTAGAAACGATCAACCTAGATCTGAAACCACCTATCAGATTGCTTTGGCCATCAAGGACGAAGTAGAAGACCTTGAAAAGGCTGGCATTACTGTCATCCAAATTGATGAAGCTGCTTTGAGAGAGGGTCTGCCACTGAGGAAATCGGAGCAAGCTGACTACTTGGACTGGGCCGTTCATTCCTTCAGAATCACTAATGTTGGCGTCCAGGATACCACTCAGATCCACACTCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATCATTAACATGGATGCCGACGTTATCACTATTGAGAACTCTCGTTCTGACGAGAAGCTCCTCTCAGTGTTCCGTGAAGGTGTGAAGTATGGTGCTGGAATTGGCCCTGGTGTGTACGACATCCACTCCCCAAGAATACCACCAACTGAGGAAATTGCTGACAGAATCAACAAGATGCTTGCAGTGCTGGAGAAGAACATCTTGTGGGTGAACCCCGACTGTGGGCTCAAGACCCGTAAGTACACAGAGGTGAAACCAGCCCTTACAAACATGGTTGCCGCAGCAAAACTCATCCGCAACGAGCTTGCCAAGTGA 2292 0.4812 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVAADLRASIWKQMANAGIKYIPSNTFSYYDQVLDATATLGAVPQRYGWTGGEIGFDTYFSMARGNATVPAMEMTKWFDTNYHFIVPELGPDVNFTYSSHKAVDEYKEAKALGVDTVPVLVGPVTYLLLSKPAKGVEKTFNLLSLLPKVLAVYKEVIADLKAAGASWIQFDEPTLVLDLESHKLQAFTDAYAELAPALSGLNVLIETYFADVPAEAYKTLTSLNGVTAYGFDLVRGTKTLDLIKGGFPSGKYLFAGVVDGRNIWANDLASSLTTLQGLEGVVGKDKLVVSTSSSLLHTAVDLVNETKLDDEIKSWLAFAAQKIVEVNALAKALSGNKDEAFFSANAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREFKANKISEEEYVKSIKEEIHKVVQLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSSVAQSFTKRPMKGMLTGPVTILNWSFVRNDQPRSETTYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQADYLDWAVHSFRITNVGVQDTTQIHTHMCYSNFNDIIHSIINMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADRINKMLAVLEKNILWVNPDCGLKTRKYTEVKPALTNMVAAAKLIRNELAK 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03402 763 CDD CIMS_N_terminal_like 3 367 - -
Vimu6g03402 763 Gene3D - 5 525 IPR038071 -
Vimu6g03402 763 SUPERFAMILY UROD/MetE-like 397 759 IPR038071 -
Vimu6g03402 763 Pfam Cobalamin-independent synthase, Catalytic domain 432 755 IPR002629 GO:0003871|GO:0008270|GO:0009086
Vimu6g03402 763 FunFam 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 5 394 - -
Vimu6g03402 763 FunFam 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 395 758 - -
Vimu6g03402 763 Pfam Cobalamin-independent synthase, N-terminal domain 3 315 IPR013215 GO:0003871|GO:0008270|GO:0008652
Vimu6g03402 763 PANTHER 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE 1 762 - -
Vimu6g03402 763 Hamap 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 1 760 IPR006276 GO:0003871|GO:0008270|GO:0009086
Vimu6g03402 763 CDD CIMS_C_terminal_like 433 756 IPR002629 GO:0003871|GO:0008270|GO:0009086
Vimu6g03402 763 Gene3D - 390 758 IPR038071 -
Vimu6g03402 763 PIRSF Met_synth_MetE 1 763 IPR006276 GO:0003871|GO:0008270|GO:0009086
Vimu6g03402 763 NCBIfam 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 6 759 IPR006276 GO:0003871|GO:0008270|GO:0009086
Vimu6g03402 763 SUPERFAMILY UROD/MetE-like 3 395 IPR038071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03402 Vimu-Chr6 30737459 30741211 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03402 K00549 - gmx:100802039 1461.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03402 6 30737459 30741211 Vimu6g03402 6 30737459 30741211 ECH
Vimu6g03402 6 30737459 30741211 Vimu8g00608 8 12649615 12653655 PCT