Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00579 ATGTCTGTGAACAATAATAACCCTTCTAAGGGCATTGGGGCGTCTTCCTCATCCTTTGGCAATGCTGGAATACCCTCCAATTCTATACCTACAAACCATGGTTTTTCACAGTCCCAAGGACAAGGGCAGATTCCCGTTGGTTTCCAAGGGCAGTTTCCACTTTCCCAGGCTCATGCTATTGTCCAAGCTCAGTCCAAGGCCCAGGCCCAGGCTCAGGCTCATGCCCAAGCAGCAGCTGCTGCCCATGCTCAAATCCAGGCTCATTTGCAAGCACAGGGGTTGACTCTTAATCAGAACCAAGGTGGTGGTTTGGGGAGTTTGGGGCTGTCGTCGGCTATTTCCACACCGGGTAATGCTAGTGGGAAACGTATCCCTCTAAAACCCCCAATTCGGCCAGTGGGATTTTCCCCTCCTAACAGCTTCTCCCCTTTGAGACCGATGGAGCTCACACCTGCTTCGCGGAGGAAGAAGCAGAAGCTTCCCGAGAAACAGCTGCAAGATAAAGTGGCAGCTATACTACCCGAGTCTGCACTGTACACACAGCTTCTAGAGTTTGAGTCTCGTGTTGATGCAGCACTTGCTAGAAAGAAGGCTGACATCCAGGAAGCGCTCAAAAACCCACCCTGTATTCAGAAAACTCTTCGCATCTATGTATTTAACACTTTTGCTAATCAAATTCGCACAATTCCAAAGAAGCCGAGTGCAGAGCCTCCAACCTGGACGCTGAAAATAGTTGGAAGGATATTGGAAGATGGAGTAGACCCTGATCAGCCAGGAGTGGTTCAGAAGTCCACTCCTTTGTATCCGAAGTTTTCAGCTTTCTTCAAAAGAGTAACCATTTCTTTAGATCAGAGACTATATCCAGATAATCACATTATTATGTGGGAGAATGCTCGATCTCCTGCTCCACATGAAGGTTTTGAAGTAAAGAGGAAAGGGGATAAAGAGTTTACAGTGAATATACGTCTGGAAATGAATTATGTGCCAGAGAAGTTTAAGCTTTCACCTGCTTTGACAGAGGTTCTTGGTATTGAGGTTGATACCCGCCCAAGGATTGTTGCAGCGATCTGGCACTATGTAAAGGCCAGGAAGTTGCAAAACCCTAATGACCCTTCTTTCTTTCACTGTGATCAGCCTCTTCAGAAAGTATTTGGAGAAGAAAAGATGAAGTTTACAATGGTTTCACAGAAAATATCTTCACATTTATTCCCTCCACAGCCTATACTTTTGGAACACAAGATCAAGCTATCGGGAAACAGTCCAGTTGGGACTGCTTGTTATGATGTGATGGTTGATGTTCCTTTCCCAATTCAGAGGGAGTTGTCTGCTTTATTGGCTAATGTGGAAAAGAGCAAAGAGATTGAGACATGTGATGAAGCAATATGTGGAATCATTAGAAAAATTCATGAGCACAGAAGGAGACGGTCATTCTTTCTTGGTTTCAGTCAATCGCCAGTAGAATTTATTAATGCATTGATTGAATCTCAAAGTAGGGATCTGAAACTTGTTTCCGGAGAACCTAGTCGCAATGCAGAAAAAGAGCGTCGATCAGATTTCTTCAACCAACCATGGGTTGAAGATGCTGTTATTCGATATCTGAATCGCAAACCAGCTGTGGGAAGTGATGCTCCAGGAAGCACATGA 1644 0.4501 MSVNNNNPSKGIGASSSSFGNAGIPSNSIPTNHGFSQSQGQGQIPVGFQGQFPLSQAHAIVQAQSKAQAQAQAHAQAAAAAHAQIQAHLQAQGLTLNQNQGGGLGSLGLSSAISTPGNASGKRIPLKPPIRPVGFSPPNSFSPLRPMELTPASRRKKQKLPEKQLQDKVAAILPESALYTQLLEFESRVDAALARKKADIQEALKNPPCIQKTLRIYVFNTFANQIRTIPKKPSAEPPTWTLKIVGRILEDGVDPDQPGVVQKSTPLYPKFSAFFKRVTISLDQRLYPDNHIIMWENARSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPALTEVLGIEVDTRPRIVAAIWHYVKARKLQNPNDPSFFHCDQPLQKVFGEEKMKFTMVSQKISSHLFPPQPILLEHKIKLSGNSPVGTACYDVMVDVPFPIQRELSALLANVEKSKEIETCDEAICGIIRKIHEHRRRRSFFLGFSQSPVEFINALIESQSRDLKLVSGEPSRNAEKERRSDFFNQPWVEDAVIRYLNRKPAVGSDAPGST 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00579 547 ProSiteProfiles SWIB/MDM2 domain profile. 327 404 IPR003121 -
Vimu8g00579 547 SUPERFAMILY SWIB/MDM2 domain 322 412 IPR036885 -
Vimu8g00579 547 SMART swib_2 328 407 IPR019835 -
Vimu8g00579 547 CDD SWIB_like 334 402 - -
Vimu8g00579 547 Gene3D SWIB/MDM2 domain 324 408 IPR036885 -
Vimu8g00579 547 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 151 501 - -
Vimu8g00579 547 MobiDBLite consensus disorder prediction 1 48 - -
Vimu8g00579 547 MobiDBLite consensus disorder prediction 114 147 - -
Vimu8g00579 547 Pfam SWIB/MDM2 domain 331 402 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00579 Vimu-Chr8 12191365 12193498 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vimu8g00579 SWIB 4.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00579 K11650 - gmx:100776562 963.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03574 6 33046882 33048708 Vimu8g00579 8 12191365 12193498 PCT