Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03574 ATGTCTATGAATAACAACTACAATTCTATCAAGCCCCTTGGGGCTTCCTCCTCCGGCTACCCACATCCTCAAATCGCGCCGGGCCAGTACCCTCTGTCCCAAGCCCACGCCATCGTCCAAGCCCAGTTCCAGGCCCAGCTCCAAGCCCACGGGCTTTCCTTTACCCCTAATGCCAAACGTTTCCCTCCAAAACCCCCCGTTCATACCGCCACGCCGCTTAAACAAACGGAACCCGTGCTCGGGCCTCGGAGGAAGAAGCCCAAGCAAAATGAGAAACAGCTTCCGGATAAAGCTTCCGCAATTCTCCCACAGTCGGCACTCTACGCGCAGCTCCTCGACGTAGAGGCGCGTGTGGACGCTGCACTTGCTAGAAAGAAGGTTGACATTCAAGAAGCAATGAGAAACCCACCCTGCATCCAGAAAACCCTTCGAATTTTCGTGTTCAACACGTTTGCAAACCAGAATGTGGATTCTTCCGCACCCACATGGACACTTAAGATTGTTGGAAGGATTTTGGAAGATGGTGAAGAAGCTGAACAACCTGGAGTTGTTGCTCACAGGATGCCACCTTTGTACCCGAAATTTTCTGCCTTTTTCAAAAGGGTAACGATTTCCCTCGACAAGAGGCTGTATCCCGATAACAATGTCATCACATGGGAGAATTCGCGGTCATCTGCCACTCATGAAGGTTTTGAGGTGAAGAGGAAAGGGGATCAGGAGTTCTCGGCGCAGATTCGGTTGGAGATGAATTACGTGCCAGAGAAGTTTATGCTGTCACCGATGTTGAGGGAAGTGCTTGGTATTCAGGTTGACACGCGTGCAAGGATTGTTTCAGCGATATGGCATTATGTTAAGGCGAGGAAGTTGCAGAACCAGAATGATCCTTCGTACTTTCACTGTGATCAGGCTCTTCAGAAGGTGTTTGGGGAGGATAAGGTGAGGTTCTCGATGGTTTCCCAGAAGATATCACAGCATTTGTTTCCTCCTCAGGTTATTCTTTTGGAACATATGATCAAGCTCTCGGGGAATAGTCCGGTCGGGTCTGCTTGTTATGATGTGATGGTTGATGTTCCTTTTCCCATTCAGAGGGAATTGAATGCTCTGGTGGCCAATGTAGAGAGGAACAAAGAGATTGATGCCTGTGATGAATCCATATGCGGAATCATTAGAAAAATACATGAGCACCGCAGGAGGCGAGCGTTCTATGTTGGTTTTAGTCAATCTCCTCTGGAATTTATTAAGGCCTTGGTTGAATCTCAAAACAAGGATCTCAAAGTTTTACTCGGAGAATCTGGTCTCAATGCTGAAAAGGAGCCGTGGGCACTGCTGAATGTTGTCTTTATAACCTTGTTTGACACCTTGGACAGGGTTGAGGATGCTATTGTTCGCTATTTGAATCGCAAACCAGCAGCAGGAAGCAATGCCCCCGGGAGCACATGA 1440 0.4854 MSMNNNYNSIKPLGASSSGYPHPQIAPGQYPLSQAHAIVQAQFQAQLQAHGLSFTPNAKRFPPKPPVHTATPLKQTEPVLGPRRKKPKQNEKQLPDKASAILPQSALYAQLLDVEARVDAALARKKVDIQEAMRNPPCIQKTLRIFVFNTFANQNVDSSAPTWTLKIVGRILEDGEEAEQPGVVAHRMPPLYPKFSAFFKRVTISLDKRLYPDNNVITWENSRSSATHEGFEVKRKGDQEFSAQIRLEMNYVPEKFMLSPMLREVLGIQVDTRARIVSAIWHYVKARKLQNQNDPSYFHCDQALQKVFGEDKVRFSMVSQKISQHLFPPQVILLEHMIKLSGNSPVGSACYDVMVDVPFPIQRELNALVANVERNKEIDACDESICGIIRKIHEHRRRRAFYVGFSQSPLEFIKALVESQNKDLKVLLGESGLNAEKEPWALLNVVFITLFDTLDRVEDAIVRYLNRKPAAGSNAPGST 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03574 479 Gene3D SWIB/MDM2 domain 248 331 IPR036885 -
Vimu6g03574 479 MobiDBLite consensus disorder prediction 54 97 - -
Vimu6g03574 479 CDD SWIB_like 258 326 - -
Vimu6g03574 479 MobiDBLite consensus disorder prediction 79 93 - -
Vimu6g03574 479 ProSiteProfiles SWIB/MDM2 domain profile. 251 328 IPR003121 -
Vimu6g03574 479 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 89 425 - -
Vimu6g03574 479 SMART swib_2 252 331 IPR019835 -
Vimu6g03574 479 Pfam SWIB/MDM2 domain 255 326 IPR003121 -
Vimu6g03574 479 SUPERFAMILY SWIB/MDM2 domain 246 336 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03574 Vimu-Chr6 33046882 33048708 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vimu6g03574 SWIB 8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03574 K11650 - gmx:100785069 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03574 6 33046882 33048708 Vimu6g03574 6 33046882 33048708 ECH
Vimu6g03574 6 33046882 33048708 Vimu8g00579 8 12191365 12193498 PCT