Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00573 ATGGCTGCCTCATCCACCATCAACAACTTCCTCTCTTTCTTCTTACCCACAAAACCTCCGCCACCCTCTACGCCGCCGCCGATCCAATTCAACCCCACCACTTCTTCTTCCACTCACAAACCCTCACAACCCCTAATTGCGCAATATGACCCTTCTTCTTCTTCTTCTACTTCTTCTTCTTCTTCTTCTTGCTCTGAATTGTCCTCTGTGATATGCCCCTCCATGGCGTACACGAACACGCTCTTCTTCCAGTCACCGTACAACGTGCAGGTGGTGGTGGCGGAGGACGAGCCCGAGGAGCGCCTCCTCAACAGGTTCCGCAGAGAGGTGTTGAAGGCCGGCGTCATTCAGGAGTGTAGGCGGAGGAGGTACTTCGAGAACAAACAGGAAGAGAAAAAACGCAAGTCGCGTGAGGCTGCCAAACGTAACCGCAAAAGGCGCCCCATGTCAAAAACTGCTGTACAGAAAAAACAGGATGTCCCAGCAACCAAGAGAGAAGATGAGGATAACTGGGATCTACCTGATGGAGATACTCTGTATTAA 543 0.5138 MAASSTINNFLSFFLPTKPPPPSTPPPIQFNPTTSSSTHKPSQPLIAQYDPSSSSSTSSSSSSCSELSSVICPSMAYTNTLFFQSPYNVQVVVAEDEPEERLLNRFRREVLKAGVIQECRRRRYFENKQEEKKRKSREAAKRNRKRRPMSKTAVQKKQDVPATKREDEDNWDLPDGDTLY 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00573 180 NCBIfam 30S ribosomal protein S21 89 146 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vimu8g00573 180 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 1 179 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vimu8g00573 180 Hamap 30S ribosomal protein S21 [rpsU]. 88 144 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vimu8g00573 180 MobiDBLite consensus disorder prediction 15 29 - -
Vimu8g00573 180 MobiDBLite consensus disorder prediction 13 60 - -
Vimu8g00573 180 Pfam Ribosomal protein S21 90 144 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vimu8g00573 180 MobiDBLite consensus disorder prediction 30 60 - -
Vimu8g00573 180 MobiDBLite consensus disorder prediction 127 180 - -
Vimu8g00573 180 Gene3D Ribosomal protein S8 103 141 IPR038380 -
Vimu8g00573 180 PRINTS Ribosomal protein S21 family signature 100 109 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vimu8g00573 180 PRINTS Ribosomal protein S21 family signature 92 100 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vimu8g00573 180 PRINTS Ribosomal protein S21 family signature 124 134 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vimu8g00573 180 PRINTS Ribosomal protein S21 family signature 112 122 IPR001911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00573 Vimu-Chr8 12163198 12170094 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00573 - - vra:106765493 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03570 6 32946412 32948971 Vimu8g00573 8 12163198 12170094 PCT