Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03570 ATGGCAGCCTCATCCTCCTTCTCCTCCTTCCTCTCCTTTCTTCTCCCACCAAAGCCACAATTGCACTCTCCTTCCCTCGCGCGTTTCTCGCTTCGAAGCCACAAGCTCTGTGCTCAACACCAGGACCACCACTCACCGGAGCTGTCCTCGAACGTTATAATGAACCCTTCTTACGCCCACGCAAACACGCTCTTCTTCCGATCTGCGTATAACGTGCAGGTGGTGGTTGACGAGAACGAGCCAGAGGAGAGGCTGCTCAACCGCTTCAGGAGAGAGGTCATGAAAGCTGGAGTCATACAAGAATGCAAGAGGAGACGCTTCTTTGAGAACAAGCAGGAGGAGAAGAAACGCAAGAACCGCGAAGCTGCTAAGCGTAAAAGCAGAAGCAGGCGTCCTCAATCAAGATTTCAAGCACAAAACAAGCAAGATGTTGCAACAACCAAGAAGGTAGAGGATGATGATAACTGGGATCTTCCAGAAGTAGACGCTCCATATATTTCAACAACATGA 510 0.502 MAASSSFSSFLSFLLPPKPQLHSPSLARFSLRSHKLCAQHQDHHSPELSSNVIMNPSYAHANTLFFRSAYNVQVVVDENEPEERLLNRFRREVMKAGVIQECKRRRFFENKQEEKKRKNREAAKRKSRSRRPQSRFQAQNKQDVATTKKVEDDDNWDLPEVDAPYISTT 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03570 169 MobiDBLite consensus disorder prediction 111 169 - -
Vimu6g03570 169 NCBIfam 30S ribosomal protein S21 72 128 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vimu6g03570 169 PRINTS Ribosomal protein S21 family signature 107 117 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vimu6g03570 169 PRINTS Ribosomal protein S21 family signature 95 105 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vimu6g03570 169 PRINTS Ribosomal protein S21 family signature 75 83 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vimu6g03570 169 PRINTS Ribosomal protein S21 family signature 83 92 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vimu6g03570 169 Pfam Ribosomal protein S21 73 126 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vimu6g03570 169 Hamap 30S ribosomal protein S21 [rpsU]. 71 127 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vimu6g03570 169 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 1 165 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vimu6g03570 169 Gene3D Ribosomal protein S8 86 124 IPR038380 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03570 Vimu-Chr6 32946412 32948971 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03570 - - gmx:100780245 186.422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03570 6 32946412 32948971 Vimu8g00573 8 12163198 12170094 PCT