LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu8g00571	ATGGGGCTCAAGAACACACTTTTCTTGGCACTGTTTGCAGCCATGGTTGCAAAGGAGGTCCTTGCAGCACAGCATGTTGTTGGTGGAAGCCAAGGTTGGGATCAATCTACAGACTTTAAGTCATGGACTTCAGGCCAAACATTCAAGGTTGGAGATAAACTTGGTATTGTGGTTGAACTAGGTAATGAGAGTGCCTACAAGAGTTGTGATATCAGCAATCCAATCCAATCCTTGAGTACTGGGAATGATGTTGTGAAATTGGAGAAACCAGGTACGAGGTACTTCACTTGTGGTACCTTGGGACACTGTAGTCAAGGGATGAAGCTCAAAATTACCATACTTAAAGGGAATGCTAATGCTCCTTCTCCAGCATCATCATCACCATCTTCATCACCATCATCATCTTCCTCCTCCTCATCATCTTTTTCTCCTGCTGTTACTACTGATGTGTCTTCCGGCTCACAATGCTTCACCTCTTTTATGTTCATTCTTGCATTATCTCTCACGGTTATGGTTTCCTTGTTTTAA	528	0.4318	MGLKNTLFLALFAAMVAKEVLAAQHVVGGSQGWDQSTDFKSWTSGQTFKVGDKLGIVVELGNESAYKSCDISNPIQSLSTGNDVVKLEKPGTRYFTCGTLGHCSQGMKLKITILKGNANAPSPASSSPSSSPSSSSSSSSSFSPAVTTDVSSGSQCFTSFMFILALSLTVMVSLF	175

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu8g00571	175	CDD	Phytocyanin	23	113	-	-
	Vimu8g00571	175	MobiDBLite	consensus disorder prediction	120	141	-	-
	Vimu8g00571	175	Pfam	Plastocyanin-like domain	34	107	IPR003245	GO:0009055
	Vimu8g00571	175	FunFam	Cupredoxin superfamily protein	22	119	-	-
	Vimu8g00571	175	SUPERFAMILY	Cupredoxins	22	113	IPR008972	-
	Vimu8g00571	175	Gene3D	-	21	120	IPR008972	-
	Vimu8g00571	175	PANTHER	BLUE COPPER PROTEIN	21	132	IPR039391	GO:0009055
	Vimu8g00571	175	ProSiteProfiles	Phytocyanin domain profile.	23	115	IPR003245	GO:0009055

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu8g00571	Vimu-Chr8	12128456	12129312	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu8g00571	1	114	Miscellaneous Gene Families	AT3G27200	55.738	1.85e-46	148

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu8g00571	-		-	vra:106767748	273.863

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu8g00571	8	12128456	12129312	Vimu6g03563	6	32900522	32901091	PCT