Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00045 ATGAGAGAAATAATAAGCATTCATATTGGACAAGCTGGAATTCAGGTTGGTAATTCATGCTGGGAGCTATATTGCCTTGAACATGGCATTCAACCTGATGGAACAATGCCCAGTGATGGCTCAGCTGAAGCACATGATGCTTTCAACACCTTCTTCAGTGAAATTGGAAGTGGCCAATATGTTCCTAGGGCACTGTTTGTTGATCTGGAACCTACTGTAATTGATGAAGTAAGATGTGGTCCTTACAGACAACTATTCCATCCCGAACAATTAATGTCTGGTAAGGAAGATGCTGCTAATAACTTTGCAAGGGGACATTACACAGTTGGAAAAGAGATTGAAGAGTTGTGCCTTGACCGTATCAGAAAATTAGCTGACAATTGCACTGGCTTGCAAGGATTCTTGGTTTTCAATGCTGTTGGTGGTGGCACTGGTTCTGGCTTGGGATCATTGCTTCTCGAACGTTTGTCTGTAGATTATGGAAAAAAGTCAAAACTTGGCTTCATCATTTATCCTTCTCCTCAGGTATCAACTGCAGTTGTTGAGCCCTACAACACTGTTCTTTCCAATCACTCTCTTATTGAGCACAGTGATGTAGTTGTGCTGTTGGACAATGAAGCAATATATGACATATGCAGAAGATCACTAGAATTAGAAAGACCAACTTACACCAACTTGAACCGTTTGATATCTCAAATAATATCTTCCTTGACTACTTCCTTGAGATTTGATGGTGCAATCAATGTGGACATTTCAGAGTTCCAAACCAACCTTGTGCCTTATCCACGAATCCATTTCATGCTCTCATCTTATGCTCCAGTTATATCTTCTGCCAAGGCCTTCCATGAGCAGCTATCAGTGCCTGAGATCACCAGAGCTGTGTTTGAGCCAACAAGCATGATGGTCAAGTGTGATCCAAGACATGGAAAGTACATGGCATGTTGCCTCATGTACCGTGGGGATATTGTGCCAAAAGATGTAAACCTTGCTGTCTCAAATATCAAGACAAAGAGACAAGTTCAATTTGTAGACTGGTAA 1038 0.4143 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDGSAEAHDAFNTFFSEIGSGQYVPRALFVDLEPTVIDEVRCGPYRQLFHPEQLMSGKEDAANNFARGHYTVGKEIEELCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFIIYPSPQVSTAVVEPYNTVLSNHSLIEHSDVVVLLDNEAIYDICRRSLELERPTYTNLNRLISQIISSLTTSLRFDGAINVDISEFQTNLVPYPRIHFMLSSYAPVISSAKAFHEQLSVPEITRAVFEPTSMMVKCDPRHGKYMACCLMYRGDIVPKDVNLAVSNIKTKRQVQFVDW 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00045 345 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 141 147 IPR017975 GO:0005525|GO:0005874|GO:0007017
Vimu8g00045 345 PRINTS Alpha-tubulin signature 147 159 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu8g00045 345 PRINTS Alpha-tubulin signature 87 100 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu8g00045 345 PRINTS Alpha-tubulin signature 320 341 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu8g00045 345 PRINTS Alpha-tubulin signature 44 57 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu8g00045 345 PRINTS Alpha-tubulin signature 119 127 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu8g00045 345 PRINTS Alpha-tubulin signature 213 225 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu8g00045 345 PRINTS Alpha-tubulin signature 18 33 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu8g00045 345 PRINTS Alpha-tubulin signature 273 288 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu8g00045 345 PRINTS Alpha-tubulin signature 160 171 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu8g00045 345 FunFam Tubulin alpha chain 265 317 - -
Vimu8g00045 345 SUPERFAMILY Tubulin C-terminal domain-like 245 345 IPR008280 -
Vimu8g00045 345 SMART Tubulin_C_4 247 345 IPR018316 -
Vimu8g00045 345 Pfam Tubulin C-terminal domain 262 345 IPR018316 -
Vimu8g00045 345 PANTHER TUBULIN 2 345 IPR000217 GO:0005874|GO:0007017
Vimu8g00045 345 SMART Tubulin_4 48 245 IPR003008 GO:0005525
Vimu8g00045 345 FunFam Tubulin alpha chain 1 267 - -
Vimu8g00045 345 Gene3D - 265 345 IPR037103 -
Vimu8g00045 345 PRINTS Tubulin signature 152 173 IPR000217 GO:0005874|GO:0007017
Vimu8g00045 345 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Vimu8g00045 345 PRINTS Tubulin signature 191 211 IPR000217 GO:0005874|GO:0007017
Vimu8g00045 345 PRINTS Tubulin signature 52 71 IPR000217 GO:0005874|GO:0007017
Vimu8g00045 345 PRINTS Tubulin signature 177 190 IPR000217 GO:0005874|GO:0007017
Vimu8g00045 345 PRINTS Tubulin signature 94 105 IPR000217 GO:0005874|GO:0007017
Vimu8g00045 345 PRINTS Tubulin signature 133 151 IPR000217 GO:0005874|GO:0007017
Vimu8g00045 345 PRINTS Tubulin signature 107 131 IPR000217 GO:0005874|GO:0007017
Vimu8g00045 345 CDD alpha_tubulin 2 345 - -
Vimu8g00045 345 Gene3D Tubulin/FtsZ, GTPase domain 1 264 IPR036525 -
Vimu8g00045 345 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Vimu8g00045 345 Pfam Tubulin/FtsZ family, GTPase domain 3 212 IPR003008 GO:0005525
Vimu8g00045 345 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 244 IPR036525 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00045 Vimu-Chr8 3206658 3208781 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00045 K07374 - gmx:100780531 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03434 6 31104255 31105600 Vimu8g00045 8 3206658 3208781 PCT