Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03434 ATGCCTAGTGATACCACAGTTGGGATTGCACATGATGCTTTCAACACCTTCTTCAGCGAGACTGGATCTGGCAAGCATGTTCCAAGGGCTTTATTTGTTGATCTGGAACCTAGTGTTATTGATGAAGTAAGAAGTGGTGCTTACAGACAACTATTTCACCCTGAGCAATTAATTTCTGGCAAGGAAGATGCTGCTAATAACTTTGCAAGGGGACACTACACTGTTGGAAGAGAAATTGTTGAACTGTGCCTTGATCGTATCAGAAAATTAGCAGACAATTGCACTGGTTTGCAAGGATTCTTGGTTTTTAATGCGGTTGGTGGTGGTACTGGTTCTGGTTTGGGATCATTACTGTTGGAACGTTTGTCTGTGGATTATGGAAAGAAATCTAAACTTGGTTTTACCATCTACCCTTCTCCTCAGGTATTTTCTTAA 435 0.4115 MPSDTTVGIAHDAFNTFFSETGSGKHVPRALFVDLEPSVIDEVRSGAYRQLFHPEQLISGKEDAANNFARGHYTVGREIVELCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVFS 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03434 144 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 107 113 IPR017975 GO:0005525|GO:0005874|GO:0007017
Vimu6g03434 144 PRINTS Tubulin signature 60 71 IPR000217 GO:0005874|GO:0007017
Vimu6g03434 144 PRINTS Tubulin signature 99 117 IPR000217 GO:0005874|GO:0007017
Vimu6g03434 144 PRINTS Tubulin signature 118 139 IPR000217 GO:0005874|GO:0007017
Vimu6g03434 144 PRINTS Tubulin signature 18 37 IPR000217 GO:0005874|GO:0007017
Vimu6g03434 144 PRINTS Tubulin signature 73 97 IPR000217 GO:0005874|GO:0007017
Vimu6g03434 144 PRINTS Alpha-tubulin signature 113 125 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu6g03434 144 PRINTS Alpha-tubulin signature 126 137 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu6g03434 144 PRINTS Alpha-tubulin signature 85 93 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu6g03434 144 PRINTS Alpha-tubulin signature 10 23 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu6g03434 144 PRINTS Alpha-tubulin signature 53 66 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu6g03434 144 Pfam Tubulin/FtsZ family, GTPase domain 12 139 IPR003008 GO:0005525
Vimu6g03434 144 SUPERFAMILY Tubulin nucleotide-binding domain-like 4 141 IPR036525 -
Vimu6g03434 144 Gene3D Tubulin/FtsZ, GTPase domain 1 144 IPR036525 -
Vimu6g03434 144 SMART Tubulin_4 14 144 IPR003008 GO:0005525
Vimu6g03434 144 PANTHER TUBULIN 10 142 IPR000217 GO:0005874|GO:0007017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03434 Vimu-Chr6 31104255 31105600 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03434 K07374 - gmx:100796371 266.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03434 6 31104255 31105600 Vimu6g03434 6 31104255 31105600 ECH
Vimu6g03434 6 31104255 31105600 Vimu8g00045 8 3206658 3208781 PCT