Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00033 ATGAAAATGCAGGTTGAGTGTACCATCCCTAAAGACGATGGCTCTTTGGCCACTTTTGTTGGATTCAGGATTCAACATGATAATGCCAGAGGCCCCATGAAAGGTGGAATCAGATACCATCCTGAGGTTGAACCAGATGAAGTGAATGCTTTGGCACAACTAATGACATGGAAGACAGCAGTAGCAAATATACCATATGGTGGGGCCAAAGGAGGGATAGGATGTGATCCATCAGAATTAAGTGTGTCAGAGTTAGAGAGACTTACCAGAGTTTTCACACAAAAAATTCATGATCTGATTGGAGTTCAGACAGATGTACCTGCACCTGATATGGGAACAGGACCGCAGACTATGGCATGGATACTAGATGAGTATTCCAAATTTCATGGCCACTCTCCTGCAGTAGTTACTGGGAAACCTATTGATCTTGGTGGATCTCTAGGCAGAGATGCAGCAACAGGAAGGGGAGTCCTCTTTGCAACTGAGGCTTTGCTTAAGGAGCATGGAAAGAGTGTATCCGGACAACGGTTTGTCATACAGGGTTTTGGAAATGTAGGGTCTTGGGCTGCCCAACTGATCAGTGAGAAAGGTGGCATAGTTGTCGCTGTGAGTGACATAACTGGGGCCATAAAGAACAACAATGGTCTTGACATACCAAGTCTACTCAAGCATTCCAGAGAAAACAGAGGAGTGAAAGGATTCCACGGTGGTGATGCTATTGATCCCATGTCAATTTTGGTTGAAGACTGTGATGTTCTTGTCCCAGCAGCTCTTGGAGGAGTCATCAATAGGGAAAACGCCAATGATATTAAAGCCAAATTTATTGTTGAAGCAGCCAATCACCCAACTGACCCTGAGGCTGATGAGATCCTGAAAAAGAGAGGGGTTGTGATCCTGCCAGATATTTTTGCAAATTCAGGAGGAGTGACAGTTAGCTACTTTGAGTGGGTGCAGAACATACAAGGATTCATGTGGGATGAGGAGAAGGTGAACAATGAATTAAGGACATACATGACCAAAGGGTTCAAAGATGTTAAGGACATGTGCAAAACCCATAATTGTGACCTTCGTATGGGGGCATTCACCCTTGCAGTTAACCGTGTGGCAAGGGCCACTGTCCTTAGAGGTTGGGAAGCTTAA 1140 0.4491 MKMQVECTIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVEPDEVNALAQLMTWKTAVANIPYGGAKGGIGCDPSELSVSELERLTRVFTQKIHDLIGVQTDVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLKEHGKSVSGQRFVIQGFGNVGSWAAQLISEKGGIVVAVSDITGAIKNNNGLDIPSLLKHSRENRGVKGFHGGDAIDPMSILVEDCDVLVPAALGGVINRENANDIKAKFIVEAANHPTDPEADEILKKRGVVILPDIFANSGGVTVSYFEWVQNIQGFMWDEEKVNNELRTYMTKGFKDVKDMCKTHNCDLRMGAFTLAVNRVARATVLRGWEA 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00033 379 Pfam Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 144 376 IPR006096 GO:0006520|GO:0016491
Vimu8g00033 379 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 3 146 IPR046346 -
Vimu8g00033 379 ProSitePatterns Glu / Leu / Phe / Val dehydrogenases active site. 64 77 IPR033524 -
Vimu8g00033 379 PANTHER GLUTAMATE DEHYDROGENASE 3 377 - -
Vimu8g00033 379 SMART ELFV_dehydrog_3 146 376 IPR006096 GO:0006520|GO:0016491
Vimu8g00033 379 PIRSF Glu_DH 1 379 IPR014362 GO:0016639
Vimu8g00033 379 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 135 157 IPR006095 GO:0006520|GO:0016491
Vimu8g00033 379 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 177 197 IPR006095 GO:0006520|GO:0016491
Vimu8g00033 379 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 56 70 IPR006095 GO:0006520|GO:0016491
Vimu8g00033 379 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 304 315 IPR006095 GO:0006520|GO:0016491
Vimu8g00033 379 Gene3D - 144 378 - -
Vimu8g00033 379 Pfam Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 3 127 IPR006097 GO:0006520|GO:0016491
Vimu8g00033 379 CDD NAD_bind_1_Glu_DH 144 370 IPR033922 GO:0016639
Vimu8g00033 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 144 377 IPR036291 -
Vimu8g00033 379 FunFam Glutamate dehydrogenase 1 143 - -
Vimu8g00033 379 Gene3D Leucine Dehydrogenase, chain A, domain 1 2 143 - -
Vimu8g00033 379 FunFam Glutamate dehydrogenase 144 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00033 Vimu-Chr8 2741371 2745969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00033 2 264 EF-hand Containing Proteins AT5G07440 76.806 1.41e-153 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00033 K00261 - gmx:100777869 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03450 6 31257529 31264064 Vimu8g00033 8 2741371 2745969 PCT