Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03450 ATGTGGCCAGACAAGTGTGAAAGTATCTGTGGATTCAATGAATTTCACTGTAACCAACAAGTGCATGAGCCTGTCTCTTCAGATGATTTTGTGGCCATTGAGAAACTTCTAATTCTTAAAAGTTTCTTCTGCATGGAGATTCCAAAGAAGTTGGCCCTTCTTGATGTTGTAGAAATTTCTTTCATAAGCTATTTCAGAAAAGTATCACAAAGGCTTCCTGAACAGATTGACTTTGAATTCACAGAAAGGGAGAAAAATAAAACTGTATTCTCATCCCGAGGAGCAAGGGGAGCCATGAATGCACTGGCAGCCACCAACAGGAACTTTAAGCTGGCCTCTAGGCTTCTGGGATTGGATTCAAAGCTTGAGAAAAGTTTACTGATTCCATTCAGGGAAATCAAGGCAAGTAAAATTTCTTCTTGTGTTGAATGTACCATACCTAAAGATGATGGCACATTGCAATCTTATGTCGGATTCAGGGTTCAACATGATAATGCCAGAGGCCCCATGAAAGGAGGAATCAGATACCATCCTGAGGTTGACCCTGATGAAGTGAATGCTTTAGCACAACTAATGACATGGAAAACAGCGGTGGCAAATATACCATATGGTGGTGCCAAAGGAGGGATAGGGTGTAATCCAGCAGATTTAAGTATATCTGAGTTAGAGAGACTAACAAGAGTTTTTACCCAGAAAATTCACGATCTGATTGGGACTCACACAGATGTGCCAGCACCTGACATGGGAACAGGACCACAGACTATGGCATGGATACTAGATGAGTACTCCAAATTTCATGGTTATTCTCCTGCAGTAGTGACTGGAAAACCTATAGATCTTGGAGGATCTCTAGGTAGAGAAGCGGCTACAGGACGAGGTGTTCTCTTTGCAACAGAGGCTTTGCTTAATGAGCACGGAAAGGGTGTATCAGGACAACGGTTTGTCATACAGGGTTTTGGAAATGTAGGGTCATGGGCTGCACAATTAATCAGTGAGAAAGGTGGGAAAGTTGTTGCTGTTAGTGACATATCTGGAGCCATAAAGAACAGCAAAGGTCTTGACATCCCAAGCCTACTCGAGCATTCCAAAAAACACAAGGGTGTAAAAGGATTCCATGGTGGTGATCCAATTTCCCCGGACTCTATATTGGTTGAAGATTGTGATGTTCTAGTTCCAGCAGCTCTTGGAGGTGTCATCAATAGGGAAAATGCAAATGAGATCAAGGCCAAATTCATTGTGGAAGCAGCTAATCACCCTACTGACCCAGAGGCTGATGAGATTCTTAAGAAAAAAGGTGTTGTCATCCTCCCAGACATATATGCAAATTCAGGAGGTGTTACAGTTAGCTACTTTGAGTGGGTTCAGAACATCCAAGGATTCATGTGGAATGAGGAAAAAGTGAACAATGAGCTAGGGAACTACATGACCAAAGGTTTCAAAGATGTGAAGGAAATGTGCAAAACCCATGATTGTGATCTTCGTATGGGAGCCTTCACCCTGGCAGTTAATCGTGTGGCACGTGCCACTATCCTTAGGGGTTGGGAAGCTTGA 1551 0.4288 MWPDKCESICGFNEFHCNQQVHEPVSSDDFVAIEKLLILKSFFCMEIPKKLALLDVVEISFISYFRKVSQRLPEQIDFEFTEREKNKTVFSSRGARGAMNALAATNRNFKLASRLLGLDSKLEKSLLIPFREIKASKISSCVECTIPKDDGTLQSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPADLSISELERLTRVFTQKIHDLIGTHTDVPAPDMGTGPQTMAWILDEYSKFHGYSPAVVTGKPIDLGGSLGREAATGRGVLFATEALLNEHGKGVSGQRFVIQGFGNVGSWAAQLISEKGGKVVAVSDISGAIKNSKGLDIPSLLEHSKKHKGVKGFHGGDPISPDSILVEDCDVLVPAALGGVINRENANEIKAKFIVEAANHPTDPEADEILKKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWNEEKVNNELGNYMTKGFKDVKEMCKTHDCDLRMGAFTLAVNRVARATILRGWEA 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03450 516 ProSitePatterns Glu / Leu / Phe / Val dehydrogenases active site. 201 214 IPR033524 -
Vimu6g03450 516 FunFam Glutamate dehydrogenase 281 515 - -
Vimu6g03450 516 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 281 514 IPR036291 -
Vimu6g03450 516 Gene3D - 281 515 - -
Vimu6g03450 516 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 272 294 IPR006095 GO:0006520|GO:0016491
Vimu6g03450 516 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 441 452 IPR006095 GO:0006520|GO:0016491
Vimu6g03450 516 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 314 334 IPR006095 GO:0006520|GO:0016491
Vimu6g03450 516 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 193 207 IPR006095 GO:0006520|GO:0016491
Vimu6g03450 516 CDD NAD_bind_1_Glu_DH 281 507 IPR033922 GO:0016639
Vimu6g03450 516 PIRSF Glu_DH 97 516 IPR014362 GO:0016639
Vimu6g03450 516 SMART ELFV_dehydrog_3 283 513 IPR006096 GO:0006520|GO:0016491
Vimu6g03450 516 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 100 283 IPR046346 -
Vimu6g03450 516 PANTHER GLUTAMATE DEHYDROGENASE 98 514 - -
Vimu6g03450 516 Gene3D Leucine Dehydrogenase, chain A, domain 1 140 280 - -
Vimu6g03450 516 Pfam Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 141 264 IPR006097 GO:0006520|GO:0016491
Vimu6g03450 516 Pfam Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 281 513 IPR006096 GO:0006520|GO:0016491
Vimu6g03450 516 FunFam Glutamate dehydrogenase 138 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03450 Vimu-Chr6 31257529 31264064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03450 99 401 EF-hand Containing Proteins AT5G07440 78.218 1.19e-176 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03450 K00261 - gmx:100789509 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03450 6 31257529 31264064 Vimu6g03450 6 31257529 31264064 ECH
Vimu6g03450 6 31257529 31264064 Vimu8g00033 8 2741371 2745969 PCT