Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04018 ATGCAATCGTACCATTTTGCATTCATATTATTGTTCTTCCTTCTTCTCCACCAATCCCTTTCCGCTAACTTCCCTGTCCCTTATTCTTCCACGGCCAAAGTAAAGAAGAACAAAAGAGGCAAGACGTTTGAGAATCAATGGAAGAGGGAAATCTGGCCCCCAGAGCCATATGCACCACAGAAGAAAATCAAAGGTCTATCTCTCATCAAAAACTACTTTGTCGAATTTGGCTATCTTCAATCCTTTGCTCCATTCAGCGATTTTTTAGACCCAAGAACAATTTCGGCCATCCAAACCTTCCAGCGACGTTTCAACCTACAAGTTACCGGCAACCTGAACAACCAGACCCTCAACCAAATCCTACTACCACGTTGCGGTGTCCCTGACAAGAGTTTCCCACGCTTCATCAACAACGAGGCGCTGCCCAGCTACAAGAACCGATGGTTCGGCAAGAGAAACCTCACCTACGGTTTTCTTCCCGAGAGTGAAATCCCAGAAAGCATGAGAAAAGTGTTCAGAGATTCCTTCACTCGCTGGGCGACGGCCACAGGGGTTTTGAATCTGACGGAGACAACCTACGAAAAGGCCGACATCAAAGTAGGGTTCTACAGTTTCACAGAAGGTGTTCCGGAGCAGTTGTATGGGATAAGCTCTGTAAGGTTGGAAGAAGGTTCTAATGTGAGTATAGGGGAGATACGTCTTGATGGTTCCTATTACTGGGCGGTGCCGAATGAAAACGACAGCGTATCGTGGGAGGAGGGGGTTTTGGACTTGGAGAGTGTGGCGATGCACGAGATAGGGCATTTACTTGGACTTGACCACTCTTTCATGAAAGAGTCTGTTATGTACCCTTACATTTTACCATCACAGCAACAAAAGATACAACTCTCGAACTTCGACAACAACGACATTCTTCAACTGTAC 924 0.4621 MQSYHFAFILLFFLLLHQSLSANFPVPYSSTAKVKKNKRGKTFENQWKREIWPPEPYAPQKKIKGLSLIKNYFVEFGYLQSFAPFSDFLDPRTISAIQTFQRRFNLQVTGNLNNQTLNQILLPRCGVPDKSFPRFINNEALPSYKNRWFGKRNLTYGFLPESEIPESMRKVFRDSFTRWATATGVLNLTETTYEKADIKVGFYSFTEGVPEQLYGISSVRLEEGSNVSIGEIRLDGSYYWAVPNENDSVSWEEGVLDLESVAMHEIGHLLGLDHSFMKESVMYPYILPSQQQKIQLSNFDNNDILQLY 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04018 308 ProSitePatterns Matrixins cysteine switch. 123 130 IPR021158 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Vimu7g04018 308 Pfam Putative peptidoglycan binding domain 67 119 IPR002477 -
Vimu7g04018 308 PRINTS Matrixin signature 261 286 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vimu7g04018 308 PRINTS Matrixin signature 120 133 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vimu7g04018 308 PRINTS Matrixin signature 296 308 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vimu7g04018 308 SUPERFAMILY PGBD-like 57 129 IPR036365 -
Vimu7g04018 308 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 146 308 - -
Vimu7g04018 308 Gene3D Collagenase (Catalytic Domain) 57 308 IPR024079 GO:0008237
Vimu7g04018 308 PANTHER MATRIX METALLOPROTEINASE 59 308 - -
Vimu7g04018 308 Pfam Matrixin 148 308 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Vimu7g04018 308 SMART col_5 144 307 IPR006026 GO:0006508|GO:0008237|GO:0008270
Vimu7g04018 308 FunFam Metalloendoproteinase 5-MMP 58 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04018 Vimu-Chr7 38019370 38020771 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04018 - - var:108336722 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g04018 7 38019370 38020771 Vimu11g02548 11 45091618 45092739 PCT