Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02548 ATGAACAAACCCCAACCTCACCAACTAATCACCCTTGCTTTCTTTCTTTCATTCTCTCTCACCAACGTCGTTGTTTCAGCTCGATTCTTCCCCAACGTCTCATCTTGGCTCCCCGCCCACGCGCCTCTCGGAGGCGCGTGGGATGCCTTTCGTAACCTCACCGGTTGCCATCGCGGCGATAACTACGACGGCCTCGCCAACCTAAAATCCTACTTCCAGCACTTCGGCTACATCCCTCACACGCCGCCATCGAACTTCTCCGATGAGTTCGACGACGCTCTCGAATCGGCGATCAAAACCTACCAGAAGAATTTCAACCTCAACGTCACCGGCGTCCTCGATGATTCCACGCTTCGGCAGATCGTCCTGCCGCGGTGTGGCGTCGCCGACATAATCAACGGTACCACGACGATGAACGCCGGAAAGCAGAACGAAACGGCCTCGTCCAGCAAGCTGCGGTTCCACACGGTGGCGCACTACACTCTGTTCCCCGGCATGCCGCGGTGGCCTGAGGGAACGGAGGAGCTCACGTACGCGTTTAACCCCGGCAACGGCCTTACCGACACTGTGAAAGGCGTTTTCGCTGCCGCTTTCGCTCGGTGGGCGGAGGTGACATCGTTGACGTTCCGCGAAACGGAGTCGTACTTCAGCGCCGACATCAGAATCGGTTTCTTCAGCGGTGACCACGGCGACGGGGAGCCGTTCGACGGGAGTTTGGGGACGCTGGCGCACGCGTTCTCGCCGACGAACGGGAGGTTCCACCTGGATGCCGACGAGGACTGGGTGGTTTCTGGCGACGTGACGCAGTCGGCACTGTCGACGGCGGTAGATTTGGAATCGGTGGCGGTGCACGAGATTGGGCACTTGCTAGGGTTAGGTCACTCTTCTGAGGAAGAAGCGGTTATGTTTCCGACGATTTCGTCGCGGAGGAAGAAGGTGGTGCTGGCGCAGGATGATATCAAAGGGATTCAATTCCTCTACGGTACCAATCCCAATTACAATGGATCCAGTGCCACGTCAGCACCGGAGAGGGACTCCAGCGACGGTTCCAATTCCTCTTCCTCTTCCTGCAGGGTTTTCACTTTGTTGACCTTTTCATTTTTATATTTTACATTATTATAG 1122 0.5651 MNKPQPHQLITLAFFLSFSLTNVVVSARFFPNVSSWLPAHAPLGGAWDAFRNLTGCHRGDNYDGLANLKSYFQHFGYIPHTPPSNFSDEFDDALESAIKTYQKNFNLNVTGVLDDSTLRQIVLPRCGVADIINGTTTMNAGKQNETASSSKLRFHTVAHYTLFPGMPRWPEGTEELTYAFNPGNGLTDTVKGVFAAAFARWAEVTSLTFRETESYFSADIRIGFFSGDHGDGEPFDGSLGTLAHAFSPTNGRFHLDADEDWVVSGDVTQSALSTAVDLESVAVHEIGHLLGLGHSSEEEAVMFPTISSRRKKVVLAQDDIKGIQFLYGTNPNYNGSSATSAPERDSSDGSNSSSSSCRVFTLLTFSFLYFTLL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02548 373 CDD ZnMc_MMP 175 328 IPR033739 GO:0008237|GO:0008270
Vimu11g02548 373 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 163 332 - -
Vimu11g02548 373 Gene3D Collagenase (Catalytic Domain) 53 334 IPR024079 GO:0008237
Vimu11g02548 373 SUPERFAMILY PGBD-like 68 131 IPR036365 -
Vimu11g02548 373 Pfam Putative peptidoglycan binding domain 65 120 IPR002477 -
Vimu11g02548 373 FunFam Metalloendoproteinase 1 55 333 - -
Vimu11g02548 373 Pfam Matrixin 174 328 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Vimu11g02548 373 PANTHER MATRIX METALLOPROTEINASE 45 342 - -
Vimu11g02548 373 SMART col_5 165 329 IPR006026 GO:0006508|GO:0008237|GO:0008270
Vimu11g02548 373 PRINTS Matrixin signature 194 209 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vimu11g02548 373 PRINTS Matrixin signature 121 134 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vimu11g02548 373 PRINTS Matrixin signature 281 306 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vimu11g02548 373 PRINTS Matrixin signature 218 246 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vimu11g02548 373 PRINTS Matrixin signature 315 328 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vimu11g02548 373 MobiDBLite consensus disorder prediction 334 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02548 Vimu-Chr11 45091618 45092739 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02548 - - gmx:100782143 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02548 11 45091618 45092739 Vimu11g02548 11 45091618 45092739 ECH
Vimu7g04018 7 38019370 38020771 Vimu11g02548 11 45091618 45092739 PCT