Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04007 ATGGCTCTCTCAACTTTTTCCCGCCGCGGCCTCGGATCCACTTTCGCCAAGCCCTTATCCGCCGCCGTCTCATCGCGCCCGATCTCCTCCGACGCCTCCCTCACCATCGAGACCTCCGTTCCCTTCACGGCGCACAACTGCGAGGCGCCGTCACGCGCCGTCACCACTTCTCCCTCCGAGCTGCTTTCCTTTTTCCGTGACATGGCCCTCATGCGCCGCATGGAGATCGCTGCCGACTCTCTCTACAAGGCCAAACTCATCCGCGGATTCTGCCACCTCTACGACGGCCAGGAAGCCGTCGCCGTGGGTATGGAGGCCGGCATCACCAGAAAGGACTGCATCATCACCGCCTACCGCGACCACTGCACCTTCCTCGGCCGCGGCGGCACGCTGCTCGAGGTGTTCTCGGAGCTGATGGGGCGCAAGGACGGATGCTCGAAAGGGAAAGGGGGTTCGATGCACTTTTATAGGAAGGAGGGTGGGTTCTACGGCGGGCATGGGATTGTGGGGGCGCAGGTTCCGTTAGGGTGTGGTTTGGCGTTTGCGCAGAAGTATAGTAAGGATGAGAGTGTGACTTTTGCCTTTTTGGTTTTGGTGAACACAGATGGGATGGGGACTGCGGAGTGGAGAGCTGCAAAGAGTCCTGCTTATTACAAGCGTGGGGATTATGTGCCTGGCTTGAAGGTAGATGGCATGGACGTTCTTGCTGTTAAGCAAGCTTGCAAATTTGCAAAAGAACATGCTTTGAAGAATGGGCCCATTATTCTTGAAATGGATACTTATAGATACCATGGTCACTCTATGTCTGATCCTGGCAGCACTTACCGCACACGTGATGAAATATCTGGTGTGAGACAGGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGTTATTGTCTCATGACATTGCTGCTGAAAAGGAGCTAAAGGTGAACAATATTGGGGAATCAGCTTATACAGGCATGAAGTTAGAGTGCAAGTGGGGTGTCATATGGGCTGGTAGTCCTGTGGTGGTAGCTAATGTTCTACTGAGTTTAATTGTACCTATGAGTATTTCTGCTGTGTGCAAGGATGAATTTGTCGATATTATGGACATTGAAAAGGAAGTCAGAAAAGAAGTCGACGAAGCCATTGCTAAAGCAAAGGAGAGTCCAATGCCAGACCCATCCGAATTATTTAGCCATGTCTACGTTAAAGGTTTCGGAGTTGAGGCATTTGGTGTTGATAGGAAAGTAGTGAGAGCTACTTTACCATAA 1257 0.5163 MALSTFSRRGLGSTFAKPLSAAVSSRPISSDASLTIETSVPFTAHNCEAPSRAVTTSPSELLSFFRDMALMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAGITRKDCIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSKGKGGSMHFYRKEGGFYGGHGIVGAQVPLGCGLAFAQKYSKDESVTFAFLVLVNTDGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLSHDIAAEKELKVNNIGESAYTGMKLECKWGVIWAGSPVVVANVLLSLIVPMSISAVCKDEFVDIMDIEKEVRKEVDEAIAKAKESPMPDPSELFSHVYVKGFGVEAFGVDRKVVRATLP 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04007 418 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 48 310 IPR029061 -
Vimu7g04007 418 Gene3D - 23 196 - -
Vimu7g04007 418 Gene3D - 197 318 - -
Vimu7g04007 418 Gene3D - 354 413 - -
Vimu7g04007 418 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 363 400 - -
Vimu7g04007 418 CDD TPP_E1_PDC_ADC_BCADC 64 381 - -
Vimu7g04007 418 Pfam Dehydrogenase E1 component 200 310 IPR001017 GO:0016624
Vimu7g04007 418 Pfam Dehydrogenase E1 component 67 195 IPR001017 GO:0016624
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04007 Vimu-Chr7 37874903 37880510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04007 1 418 Acyl Lipid Metabolism Gene Families AT1G24180 63.252 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04007 K00161 - thj:104819639 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g04007 7 37874903 37880510 Vimu7g04007 7 37874903 37880510 ECH
Vimu7g04007 7 37874903 37880510 Vimu11g02532 11 44704741 44709223 PCT