Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02532 ATGGCTCTATCGCGAGTTGCTTCGCCATCGCCATTGAATCTGCTGAATCCCCTTTCCTCTTATTTGTCGCTACGACGACGGTCGTTGTCCTCGTTGTCCACGGAACCTCTCACCGTGGACACTTCGCTTCCCTTCACCACCCATCGCTGCGACGAGCCTTCACGCGCCGTCGAGACCTCGGCGGCGGAGCTCTTCTCGTTCTTCCGTAACATGACGCTGATGCGGCGGATGGAGATCGCGGCGGACTCCCTCTATAAGGCCAAGCTGATCCGCGGCTTCTGCCATCTCTACGACGGGCAGGAGGCCGTTGCGGTGGGGATGGAGGCCGCGATCACGCGCAAGGACTGCATCATCACTGCTTACCGTGACCACTGCACCTTCCTGAGCCGTGGCGGAACCCTGATCGAGGTCTTCGCCGAGCTCATGGGCCGCCGCGACGGTTGCTCTAAGGGGAAAGGTGGTTCCATGCACTTTTACAGGAAAGAGGGTGGCTTCTACGGTGGGCATGGCATTGTAGGGGCTCAGGTTCCGCTTGGTTGTGGATTGGCTTTTGCTCAGAAGTATTCTAAGGATGAGACTGTTACGTTTTCTTTGTACGGTGATGGTGCTGCCAATCAGGGGCAGTTGTTCGAGGCGCTTAACATTTCTGCGCTTTGGGATCTTCCTTCTATTTTTGTCTGCGAGAATAACCATTATGGAATGGGGACTGCTGAGTGGAGAGCTGCTAAGAGTCCTGCTTATTACAAGCGTGGGGATTATGCTCCTGGATTGAAGGACTATGGTATAGCAGCCCTTCCATTGTCTTCTCTACTTTTGTGGCAATTTTTGTTGCTGGTAGATGGCATGGATGTTCTTGCTGTGAAACAAGCTTGTAAATTTGCCAAGGAGTTTGCTTTGAAGAATGGCCCCATTATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTGGCAGCACATACCGCACACGTGATGAAATTTCTGGTGTGAGACAGGAGCGTGATCCAATTGAAAGAGTAAGAAAGCTGCTATTGGTTCATGAGATTTCTACTGAAAAGGAGCTAAAGGTGATTGAGTGA 1092 0.5201 MALSRVASPSPLNLLNPLSSYLSLRRRSLSSLSTEPLTVDTSLPFTTHRCDEPSRAVETSAAELFSFFRNMTLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITRKDCIITAYRDHCTFLSRGGTLIEVFAELMGRRDGCSKGKGGSMHFYRKEGGFYGGHGIVGAQVPLGCGLAFAQKYSKDETVTFSLYGDGAANQGQLFEALNISALWDLPSIFVCENNHYGMGTAEWRAAKSPAYYKRGDYAPGLKDYGIAALPLSSLLLWQFLLLVDGMDVLAVKQACKFAKEFALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLVHEISTEKELKVIE 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02532 363 CDD TPP_E1_PDC_ADC_BCADC 67 363 - -
Vimu11g02532 363 Gene3D - 24 363 - -
Vimu11g02532 363 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 32 258 - -
Vimu11g02532 363 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 53 362 IPR029061 -
Vimu11g02532 363 Pfam Dehydrogenase E1 component 70 258 IPR001017 GO:0016624
Vimu11g02532 363 Pfam Dehydrogenase E1 component 277 362 IPR001017 GO:0016624
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02532 Vimu-Chr11 44704741 44709223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02532 1 363 Acyl Lipid Metabolism Gene Families AT1G24180 73.554 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02532 K00161 - gmx:100813933 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02532 11 44704741 44709223 Vimu11g02532 11 44704741 44709223 ECH
Vimu7g04007 7 37874903 37880510 Vimu11g02532 11 44704741 44709223 PCT