Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03876 ATGTTGGACGGTCGTTCGTGCGTTGTTCCGAGGTTGTTTTCCAGCGCTTGCCAGGCAGAGAACGACTGGTCTTACATGAAGTACTTGCTGGAGTTGGACATCAAGAATGGAAAGCGCCCTATGGAGATTGATGATGTTGAGGATGAACCCCAGCAGCCGAGGAAGTGTACTAGGAAGTTGGATTCTCACAATAGAGTTGAAATGGCTCGAATTTCCCTTCAAAGGCAATCTATTGAGGCCAATGATTCCGTTGTTTCCCAGATGGATCAGGAGGCCATTGAGCCATTGAACGTTTGTGAAGGAGTTGTCGGAGAAGATGGAGCTTTGACCGACCGGCTATTGGGTGAGCAAGAACAGGAGGGTGATGGTGATTTGATGGATGTTGGTGACCATCAATCCGATGAACAGCAGCAGGCTAAGCCTGGGGATTTATCAGATTTTGGTGCCAGGCTATATGATGAATATCGGTTGGAGCATGATGAGAATCTAATGAATTCAACTGAGCAGCAATCTGAGCAGCAGCAGCAGCATGGTGGGGATTCTTCAGATTCTGGTTCTCTCTTGCCACGCATGAACCGTGACAGCTCAATAGCTTGTCTCAGCCGGTGTTCAAGGTCAGACTATGGTTCTCTAGCCTCGCTGAATAGGAGCTTCCGGAACATAATCCGAAGTGGTGAACTCTATCAATGGAGGAGACTAAATGGTATTATGGAGCACTGGATTTATTTTTCCTGCGCCCTCCTGGAATGGGAGGCCTATGATCCAATCCGTCAGAGGTGGATGCATTTGCCAAGGATGGCTTCTAATGAGTGCTTTATGTGTTCAGACAAGGAATCTTTAGCTGTAGGAACTGAGCTACTTGTGTTTGGGAGGGAGCTAAGATCTCATGTGATTTACAGATACAGTCTGTTGACAAACTCATGGACATCTGGAATGAGGATGAATGCTCCAAGATGCTTGTTTGGCTCAGCAAGCCTTGGAGAGATTGCAATATTAGCTGGTGGGTGTGATTCAGAGGGACACATCCTGGACTCTGCTGAATTATACAATTCTGAGACTCAAACGTGGGAAACACTGCCAAGTATGAAGAAACCAAGGAAGATGTGTTCTGGGGTGTTTATGGATGGAAAGTTTTATGTTATAGGGGGGATTGGGGGGAGTGATTCTAAGGTGCTAACATGTGGAGAGGAGTACAATGTTCAGAGCAGGACATGGACAGAGATTCCTAACATGTCCCCAGGAAGAAGTAGTAGGGGTCCTGAGATGCCTGCAACAGCTGAGGCACCACCTCTGGTTGCAGTTGTAAATGATGAATTATATGCTGCTGATTATGCAGACATGGAGGTTAAGAAGTATGACAAGGAAGAAAAAGTGTGGATTACCATTGGGAGACTGCCAGAACGTGCAGTGTCGATGAATGGTTGGGGTCTTGCATTCAGGGCATGTGGAGATAAGCTTATTGTGATTGGTGGACCTAGGACTCATGGTGAGGGTTTTATTGAGCTCAATTCATGGGTGCCTAGTGCAGGGCCTCCACACTGGGATCTACTTGCTAGGAAACGTTCTGGCAACTTTGTTTATAATTGTGCTGTGATGGGATGTTGA 1605 0.4673 MLDGRSCVVPRLFSSACQAENDWSYMKYLLELDIKNGKRPMEIDDVEDEPQQPRKCTRKLDSHNRVEMARISLQRQSIEANDSVVSQMDQEAIEPLNVCEGVVGEDGALTDRLLGEQEQEGDGDLMDVGDHQSDEQQQAKPGDLSDFGARLYDEYRLEHDENLMNSTEQQSEQQQQHGGDSSDSGSLLPRMNRDSSIACLSRCSRSDYGSLASLNRSFRNIIRSGELYQWRRLNGIMEHWIYFSCALLEWEAYDPIRQRWMHLPRMASNECFMCSDKESLAVGTELLVFGRELRSHVIYRYSLLTNSWTSGMRMNAPRCLFGSASLGEIAILAGGCDSEGHILDSAELYNSETQTWETLPSMKKPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYNVQSRTWTEIPNMSPGRSSRGPEMPATAEAPPLVAVVNDELYAADYADMEVKKYDKEEKVWITIGRLPERAVSMNGWGLAFRACGDKLIVIGGPRTHGEGFIELNSWVPSAGPPHWDLLARKRSGNFVYNCAVMGC 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03876 534 Pfam Kelch motif 317 362 IPR006652 GO:0005515
Vimu7g03876 534 Pfam Kelch motif 365 412 IPR006652 GO:0005515
Vimu7g03876 534 SUPERFAMILY Kelch motif 247 522 IPR015915 GO:0005515
Vimu7g03876 534 MobiDBLite consensus disorder prediction 165 188 - -
Vimu7g03876 534 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 178 534 - -
Vimu7g03876 534 Gene3D - 233 511 IPR015915 GO:0005515
Vimu7g03876 534 MobiDBLite consensus disorder prediction 121 146 - -
Vimu7g03876 534 MobiDBLite consensus disorder prediction 166 188 - -
Vimu7g03876 534 SMART kelc_smart 285 328 IPR006652 GO:0005515
Vimu7g03876 534 SMART kelc_smart 329 376 IPR006652 GO:0005515
Vimu7g03876 534 SMART kelc_smart 377 437 IPR006652 GO:0005515
Vimu7g03876 534 FunFam F-box/kelch-repeat protein SKIP11 233 519 - -
Vimu7g03876 534 MobiDBLite consensus disorder prediction 121 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03876 Vimu-Chr7 35788994 35796809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03876 194 410 EF-hand Containing Proteins AT4G39560 25.346 1.35e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03876 - - gmx:100820308 970.304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03876 7 35788994 35796809 Vimu10g01008 10 9289152 9290651 ECH
Vimu7g03876 7 35788994 35796809 Vimu7g03876 7 35788994 35796809 ECH