Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01008 TGTGCATGCGATGATTATGGGTATCATGTTGAAAAATTGATGCTTCTGGTTTTTGTATTGATTCTTTCTGTCGACATGTTGGAGGGTCCAACCTTTCTTGTTTCGAGGGACATACCGAGCTCATGTGAGCAAGAGACCAGGTGGATTTACAGTTCCTTCTGCGTGATGCAGCTCACAAACAATAAGCGCGGACTGGAGCTAGAGGAAGAGGCTGTGCTGAGAAAGTCATGCAAGCTTTCAGATGCTCCTGAGGAAGGGGAAACAAAGAAGAACATCCAAGATCTTTCCCCATCCCTTAACCAAGCAAATGACCAAAATCATGCAAGTGACCAGTCAGACTCGACTTCACTTATCTACCAACTTGGTCGGGACATCTCAATTAATTGTCTCCTACGATGTTCAAGGTCTGACTATGGTTCGATTGCCTCATTGAACCAAAGTTTTCGGTCTCTCATCCGGACCGGAGAGCTTTACAGGCTGAGGCGGCAGATGGGTATCATAGAGCATTGGGTTTACTTTTCTTGCAATCTCCCTGAATGGGAGGCATTTGATCCAAACACTGGTAGATGGATGCGCTTGCCCAGAATGCCTTCTAATGAATGCTTTATCTGTTCAGATAAGGAGTCATTGGCTGTTGGTACAGAGCTTCTTGTTTTTGGAAAGGAGATAATGTCTCCTGTCATATACAGATATAGCATTCTGATGAACTCGTGGTCATCTGGTATGGAAATGAATGTTCCTAGATGCCTGTTTGGTTCTGCCAGCCTTGGAGAAGTTGCCATATTAGCTGGTGGTTGTGATCCGCGGGGCAACATTTTGAGCTCTGCAGAGCTCTATAACTCAGAAACTGGGACGTGGGAGATTCTACCAAACATGAATAAAGCTAGGAAAATGTGTTCTGGTGTATTTATAGACAGGAAATTTTATGTGATTGGTGGGATTGGAGTAGGTAACTCAAGGCAGTTAACATGTGGTGAAGAGTTTGATATGCAGACGAGAAAGTGGAGAGAAATACCCAACATGTTCCCTAGGAGAAATGGAGGATCTGAGGTGACTGATGTTTCGGCTGCTGCTGAGGCACCTCCGTTGGTTGCAGTTGTAAATAATGTATTGTACGCTGCAGATTATGCCCTACAAGAGGTAAGGAGATATGATAAAGACAATAATTCATGGGTCACTATTGGAAGATTACCTGATCGAATAGTCTCAATGAATGGCTGGGGATTAGCCTTTCGTGCATGTGGGAATAGGCTAATTGTTATTGGTGGGCCAAGAGCTTTGGATGGAAGGGTAATTGAGATCAATGCTTGTGTCCCTGGTGAAGGTGTGCCAGAGTGGAACCTGCTTGCTAGCAGGCAATCAGGAAGCTTTGTGTATAACTGCGCAGTGATGGGATGCTGA 1401 0.4475 CACDDYGYHVEKLMLLVFVLILSVDMLEGPTFLVSRDIPSSCEQETRWIYSSFCVMQLTNNKRGLELEEEAVLRKSCKLSDAPEEGETKKNIQDLSPSLNQANDQNHASDQSDSTSLIYQLGRDISINCLLRCSRSDYGSIASLNQSFRSLIRTGELYRLRRQMGIIEHWVYFSCNLPEWEAFDPNTGRWMRLPRMPSNECFICSDKESLAVGTELLVFGKEIMSPVIYRYSILMNSWSSGMEMNVPRCLFGSASLGEVAILAGGCDPRGNILSSAELYNSETGTWEILPNMNKARKMCSGVFIDRKFYVIGGIGVGNSRQLTCGEEFDMQTRKWREIPNMFPRRNGGSEVTDVSAAAEAPPLVAVVNNVLYAADYALQEVRRYDKDNNSWVTIGRLPDRIVSMNGWGLAFRACGNRLIVIGGPRALDGRVIEINACVPGEGVPEWNLLASRQSGSFVYNCAVMGC 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01008 466 Gene3D - 160 438 IPR015915 GO:0005515
Vimu10g01008 466 MobiDBLite consensus disorder prediction 84 111 - -
Vimu10g01008 466 SUPERFAMILY Kelch motif 175 462 IPR015915 GO:0005515
Vimu10g01008 466 SMART kelc_smart 307 354 IPR006652 GO:0005515
Vimu10g01008 466 SMART kelc_smart 259 306 IPR006652 GO:0005515
Vimu10g01008 466 Pfam Kelch motif 295 341 IPR006652 GO:0005515
Vimu10g01008 466 Pfam Kelch motif 247 293 IPR006652 GO:0005515
Vimu10g01008 466 FunFam F-box/kelch-repeat protein SKIP11 163 451 - -
Vimu10g01008 466 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 108 466 - -
Vimu10g01008 466 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01008 Vimu-Chr10 9289152 9290651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01008 115 340 EF-hand Containing Proteins AT4G39560 27.826 2.53e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01008 - - gmx:100788507 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03876 7 35788994 35796809 Vimu10g01008 10 9289152 9290651 ECH
Vimu10g01008 10 9289152 9290651 Vimu10g01008 10 9289152 9290651 ECH