Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03810 ATGGGACTTGTTCAACATCCCATGTGTTGCCACTCACAGAAACAGCAACAACAACAACAAAAATCCTACGATCACTTCCATTCAGAATCATCAACCTCTTCTTCTCTCCATTCACAGCCAAGTCTTCCTTCAGTCCCTTCACTAAGTTTCCTCACCCCACAACAACAACCGCACCACCCCCAACAACAACCTCAATCCACCGTCAAAATCCACTCCTCCCCAATCTCCTCCCTCGCCCTCCACGGCAAACTCCTCTACAGCGCCGCCTCCAGCGGGGAGGTCAAAACATGCAGCAGAGACCCTTTCACCCTCCAATCCGATACCAGCACCAACACCAACACCAACGTTGTTGTAGTTGCAACCACCAACGCGCCCGTCAAGTCTCTCATCGTATACCACGACACACTCTTCACCGCACATCAAGATCACAAAATCAGAGTCTGGAAAGCCGACCAACCCACCAAGTGCATCGCCACGCTTCCCACGCTCCACGACCGTTTCTCCAAGCTATTCTCCTCCAAGAACTACGTTAAGGTGCGCCGCCACAAAAAGCGCACGTGGGTGCATCACGTGGACGCCGTTTCCACCCTCGCGCTCTCCCACGACGGCTTCCTCCTGTACTCCGCTTCCTGGGACAGGACGTTCAAAATCTGGCGAACCTCGGACTTCAAATGTTTGGAGTCCATACAAAATGCGCACGAGGACGCGATTAACTCCTTGGTTTTGTCGAATGACGGCGCCGTCTACACGGGCTCCGCCGACACAAAGATAAAGATGTGGAAGAAGCGTGAGGGTGAGAAAAAGCATTCGCTTGTGAGAACGTTAGAGAAGCACAAATCCGCAGTTAACGCTTTGGCGCTTAGCGCAGATGGGTCGGTGCTGTATTCTGGCGCGTGTGACAGATCAATTTTAGTGTGGGAAAGTGATGATAATAATATGGCGGTGGTGGGGGCTTTAAGGGGACACACGAAGGCGATACTGTGTTTGGCGGTGATGGCGGATTTGGTGTGTAGTGGATCAGCTGATAACAGTGTTAGGGTATGGAGGAAAGAGACTGGGAAGGGTTATTCGTGTTTGGCGCTGTTGGAAAGTCATCGACGACCCGTGAAGTGTTTGGCTATGGCTGTTGACTCCAACACTGGTGGTCCTGATCAGGATCATAGGTCTTATCTGGTTTACAGTGCAGGTTTGGACTGTGACATTAAAGTCTGGCAAATACGCGTTCCTTTGTTGTCACTGTGA 1242 0.5145 MGLVQHPMCCHSQKQQQQQQKSYDHFHSESSTSSSLHSQPSLPSVPSLSFLTPQQQPHHPQQQPQSTVKIHSSPISSLALHGKLLYSAASSGEVKTCSRDPFTLQSDTSTNTNTNVVVVATTNAPVKSLIVYHDTLFTAHQDHKIRVWKADQPTKCIATLPTLHDRFSKLFSSKNYVKVRRHKKRTWVHHVDAVSTLALSHDGFLLYSASWDRTFKIWRTSDFKCLESIQNAHEDAINSLVLSNDGAVYTGSADTKIKMWKKREGEKKHSLVRTLEKHKSAVNALALSADGSVLYSGACDRSILVWESDDNNMAVVGALRGHTKAILCLAVMADLVCSGSADNSVRVWRKETGKGYSCLALLESHRRPVKCLAMAVDSNTGGPDQDHRSYLVYSAGLDCDIKVWQIRVPLLSL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03810 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 275 316 IPR001680 GO:0005515
Vimu7g03810 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 275 307 - -
Vimu7g03810 413 MobiDBLite consensus disorder prediction 9 72 - -
Vimu7g03810 413 Pfam WD domain, G-beta repeat 271 306 IPR001680 GO:0005515
Vimu7g03810 413 Pfam WD domain, G-beta repeat 316 348 IPR001680 GO:0005515
Vimu7g03810 413 Pfam WD domain, G-beta repeat 185 218 IPR001680 GO:0005515
Vimu7g03810 413 Pfam WD domain, G-beta repeat 225 261 IPR001680 GO:0005515
Vimu7g03810 413 SMART WD40_4 355 405 IPR001680 GO:0005515
Vimu7g03810 413 SMART WD40_4 222 261 IPR001680 GO:0005515
Vimu7g03810 413 SMART WD40_4 180 219 IPR001680 GO:0005515
Vimu7g03810 413 SMART WD40_4 61 98 IPR001680 GO:0005515
Vimu7g03810 413 SMART WD40_4 312 349 IPR001680 GO:0005515
Vimu7g03810 413 SMART WD40_4 268 307 IPR001680 GO:0005515
Vimu7g03810 413 SMART WD40_4 112 149 IPR001680 GO:0005515
Vimu7g03810 413 Gene3D - 5 174 IPR015943 GO:0005515
Vimu7g03810 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 218 - -
Vimu7g03810 413 CDD WD40 67 405 - -
Vimu7g03810 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Vimu7g03810 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 270 IPR001680 GO:0005515
Vimu7g03810 413 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 19 407 IPR045182 -
Vimu7g03810 413 SUPERFAMILY WD40 repeat-like 60 406 IPR036322 GO:0005515
Vimu7g03810 413 Gene3D - 271 411 IPR015943 GO:0005515
Vimu7g03810 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 348 IPR001680 GO:0005515
Vimu7g03810 413 FunFam BnaA09g28200D protein 177 265 - -
Vimu7g03810 413 Gene3D - 175 270 IPR015943 GO:0005515
Vimu7g03810 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 348 - -
Vimu7g03810 413 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03810 Vimu-Chr7 33911124 33912365 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03810 232 406 Miscellaneous Gene Families AT5G08390 24.590 7.27e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03810 - - vun:114174011 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03810 7 33911124 33912365 Vimu10g01157 10 11186698 11188854 ECH
Vimu7g03810 7 33911124 33912365 Vimu7g03810 7 33911124 33912365 ECH
Vimu7g03810 7 33911124 33912365 Vimu10g01157 10 11186698 11188854 PCT